LOCUS       NM_001191859            3734 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 33 (Rbm33), mRNA.
ACCESSION   NM_001191859 XM_342610
VERSION     NM_001191859.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jul 17, 2010 this sequence version replaced XM_342610.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                JAXUCZ010000004.1  7820641-7820683     c
            44-122              JAXUCZ010000004.1  7808947-7809025     c
            123-171             JAXUCZ010000004.1  7803980-7804028     c
            172-248             JAXUCZ010000004.1  7800132-7800208     c
            249-561             JAXUCZ010000004.1  7799347-7799659     c
            562-681             JAXUCZ010000004.1  7796221-7796340     c
            682-853             JAXUCZ010000004.1  7788732-7788903     c
            854-1062            JAXUCZ010000004.1  7783101-7783309     c
            1063-1345           JAXUCZ010000004.1  7779479-7779761     c
            1346-1404           JAXUCZ010000004.1  7773229-7773287     c
            1405-1537           JAXUCZ010000004.1  7753032-7753164     c
            1538-1881           JAXUCZ010000004.1  7751631-7751974     c
            1882-2196           JAXUCZ010000004.1  7749693-7750007     c
            2197-2484           JAXUCZ010000004.1  7748244-7748531     c
            2485-3135           JAXUCZ010000004.1  7745029-7745679     c
            3136-3345           JAXUCZ010000004.1  7726332-7726541     c
            3346-3534           JAXUCZ010000004.1  7724256-7724444     c
            3535-3623           JAXUCZ010000004.1  7720572-7720660     c
            3624-3734           JAXUCZ010000004.1  7720180-7720290     c
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..3734
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /note="RNA binding motif protein 33"
                     /db_xref="GeneID:362297"
                     /db_xref="RGD:1310651"
     CDS             1..3672
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /note="RNA-binding protein 33-like"
                     /codon_start=1
                     /product="RNA-binding protein 33"
                     /protein_id="NP_001178788.1"
                     /db_xref="GeneID:362297"
                     /db_xref="RGD:1310651"
                     /translation="MAAALGAGGGAGAGDDDFDQFDKPGAERSWRRRAADEDWDSELE
                     DDLLGEDLLSGKKNQSDLSDEELNDDLLQSDNEDEENFSSQGVTISLNTTSGIVTSFE
                     LSDNTNDQSGEQESEYEQGDDELAYHKPEEQELYTQEYPEEGQYEGHDTELTEDQIEY
                     GDEPEEEQLYSDEVLDIEINEPLDEFTDEEYLQAYGGQQGLQVREDCEAEDDLDEITD
                     SQVASETHEGGMETLELQKDIKEESDEEDDDDEESGRLRFKTERKEGTIIRLSDVTRE
                     RRNIPETLELSAEAKAALLEFEERERQHKQGRYGSRRGGRRGGSLMCRGMGDQRRDNS
                     ERGRMKEHRPALLPTQPPVVAHSPRLIPPPQQQPPPPPPPPQQQPIRSLFQQQQLQPL
                     LPLQHPHHPSPPQGVHMPPQIETPRMMLTPPPVTPQQPKNIHINPHFKGTVVTPVQVP
                     LLPVPSQPRPAVGPQRFPGPPEFPQHTPGPVPNSFNQPPRLPLQDQWRAPPPPQERDP
                     FFLGVSGEPRFPSHLFLEQRSPPPPPPPPTLLNSSHPVPTQSPLPFTQPGPAFNQQGQ
                     QPVFPRERPVRPALQPPGPVGILHFSQPGSATARPFIPPRQPFLPSPGQPFLPTHAQP
                     NLQGPLHPPLPPPHQPQPQPQQPQQQPQHHQHQPPLQPPLQPPHQPPPQHQPPPQHQP
                     QQHQHHHHLSAPPPPLMPMSQPQFRPHVQTAQPQSNSSRMQCTPRQGLRHNTASQNIS
                     KRPMQQMQPTAPRNSNLRELPIAPSHVLEMSGNRCSSTPAAQVKSIANTSPPCRAVVA
                     SRSSQGKTDAKAKPLSPGAQPKEEAKAEAEFPDEDEETRLYRLKIEEQKRLREEILKQ
                     KELRRQQQAGARKKELLERLAQQQQQQQQQQQQQQQQIYGSQTPMEQEELAATPSPTN
                     GNPLLPFPGTQCRQNVKTRLLVKNQDVTAANVQPKAVNFVPPGANMQHQGQHLRPLKH
                     LRQLPHKVLHVKPMDMEETPHSPQAARVTSLQGRPQDTKPGVKRTVMHRANSGGGGDG
                     PHVSSKVRVIKLSGGQGGESDGFSHTEGQPQRLPQPPDMRQQPTRKVTLTKGVPQQPQ
                     HLPVGPHMYPAIPPGIKSIQGIHPAKKAIMHGRGRGVAGPMGRGRLMPNKQNLRVVEC
                     KPQPCVVSVEGLSSSTTDVQLKSLLMSVGPIQSLQMLPQQRKAIAKFKEPAHALAFQQ
                     KFHRHMIDLSHINVALIVE"
     exon            1..43
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            44..122
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            123..171
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            172..248
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            249..561
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            562..681
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            682..853
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1062
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1345
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1404
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1537
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1881
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2196
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2484
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            2485..3135
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            3136..3345
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            3346..3534
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            3535..3623
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
     exon            3624..3734
                     /gene="Rbm33"
                     /gene_synonym="RGD1310651"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggccg ccctgggcgc gggcggagga gcaggcgctg gagatgatga ctttgaccag
       61 tttgacaagc ctggtgcaga acggtcctgg agaagaagag ctgctgacga ggactgggac
      121 agtgaacttg aagatgactt gcttggagaa gatttactgt ctggcaaaaa gaatcagtcg
      181 gatttgtcag atgaagagct gaatgatgat cttttacaga gtgataatga agatgaagaa
      241 aatttcagtt ctcagggtgt caccatcagt ctgaatacca cctctggcat agttacatca
      301 tttgagctgt ctgacaacac caatgaccaa tccggagaac aggaatctga gtatgaacaa
      361 ggagacgatg agctagccta ccacaaacct gaggaacaag aactgtatac tcaagagtac
      421 ccagaggaag gacagtatga aggccacgac acagagctga cagaagacca aatagaatat
      481 ggggatgagc cggaggagga gcagctgtac agtgatgaag tgctggacat tgaaatcaat
      541 gaacctttag atgagtttac agatgaagaa tacttgcagg cttatggtgg gcaacaaggg
      601 ctgcaagtgc gggaagactg tgaggctgaa gatgacttag atgagattac tgattcccag
      661 gttgcttctg agacccacga gggaggaatg gaaaccctgg aactccagaa agacatcaaa
      721 gaagaatcag atgaagaaga tgatgatgat gaagaatctg gacgattacg ttttaaaact
      781 gaaaggaaag aaggaacaat tattaggctt tcagatgtaa ctagagagag aaggaacatt
      841 ccagaaactt tggagctttc tgcagaagcc aaagccgcat tgcttgaatt tgaagaaaga
      901 gagcgacagc ataagcaggg gcgctacggt tcccggcggg gaggaaggcg aggaggctct
      961 ctgatgtgcc gaggaatggg agaccagaga cgggacaaca gtgagagggg aaggatgaag
     1021 gagcacaggc ctgccctgct tcctacacag cctcctgttg tggctcactc tccaagatta
     1081 atccctcctc cacagcagca gcctcctcca ccaccgccac cacctcagca gcagccaatc
     1141 agaagtctgt tccagcaaca gcagctgcag cctctactcc ccttacagca cccgcatcac
     1201 ccctccccac ctcagggagt gcacatgccc ccccagattg agactccaag gatgatgctg
     1261 acccctcccc cagtgactcc tcagcagccc aagaacatcc acatcaaccc acacttcaag
     1321 gggacagtgg taacccctgt tcaagtgccc ttgctgccag ttccaagcca gccgaggcct
     1381 gcggtgggac cccagaggtt tccaggccct ccagaatttc cacagcacac acctggacct
     1441 gttcccaaca gttttaacca gccacctcga cttcctctcc aggaccagtg gagagcccca
     1501 cccccacctc aggaacggga ccctttcttc ttaggagttt caggtgaacc aaggttcccc
     1561 agtcatcttt ttttggaaca gcgaagtcct cctccaccac cgcctcctcc cacgctcctg
     1621 aacagcagcc atcctgtccc cactcagagc cccttaccgt tcactcagcc tggaccagca
     1681 tttaatcagc aaggacagca gccagtgttc cctcgagaga ggcctgtaag accagccctg
     1741 cagcccccag gcccagtggg gatcctgcac tttagccagc cagggtcagc aactgccagg
     1801 cctttcattc ctcctagaca gccgtttcta cccagcccgg gacagccatt cctgcctaca
     1861 catgcacagc ctaaccttca gggacccttg catcctccgt tgccaccacc tcatcaacca
     1921 cagccccagc cgcagcagcc ccagcagcag ccccagcatc accagcatca gccacccctt
     1981 caacctcccc ttcagcctcc acaccagcct cccccacagc atcagcctcc ccctcagcat
     2041 cagccacagc aacaccagca tcaccaccac ctttctgctc ctccccctcc tctgatgccc
     2101 atgtctcagc cacagttcag gcctcatgta cagactgccc agcctcagtc caacagcagt
     2161 cggatgcagt gtactccacg tcaggggctc cggcataaca cagcatctca gaatataagc
     2221 aaacggccca tgcagcagat gcaacccact gctcccagaa acagtaatct tcgtgaactc
     2281 cccatagcac cttcacatgt tttggaaatg agtggtaatc gctgctcctc cacacctgca
     2341 gctcaggtga agtccattgc caacacatcc ccaccttgta gggctgtggt ggcttccagg
     2401 agctcacagg gaaagactga tgcaaaagcc aaaccactta gtcctggggc tcaacctaag
     2461 gaagaagcaa aagcagaagc agagtttcct gatgaagatg aagagacaag gttatatcgc
     2521 ttaaagatag aggagcagaa gcgactgaga gaagaaatcc taaagcagaa ggagctacga
     2581 aggcagcagc aggctggtgc cagaaagaag gagttactgg aaagacttgc acagcagcaa
     2641 cagcagcagc aacaacaaca gcagcagcag cagcagcaaa tctatggctc tcagaccccc
     2701 atggagcaag aggaactggc agctacacca tcccccacca atggtaaccc actgttgccc
     2761 tttccaggga cacaatgcag gcagaatgtg aaaaccagac ttcttgtcaa aaaccaagat
     2821 gtcaccgctg ctaatgttca gcccaaagcg gtaaactttg tcccgcctgg tgctaatatg
     2881 cagcatcaag ggcaacactt gagaccattg aagcatctgc gacagctgcc acacaaagtc
     2941 ctccatgtca aacctatgga tatggaggag accccccact ccccacaggc agccagagtg
     3001 acatccctcc agggccggcc tcaggacacc aagccagggg tgaagaggac tgtcatgcac
     3061 agggccaaca gtggaggtgg tggagatggg ccacatgtca gctccaaggt cagggtgatt
     3121 aagttgtctg gagggcaggg aggagagagc gatggttttt ctcacacaga aggccagccc
     3181 cagcggcttc cacagcctcc ggacatgaga cagcagccta cccgcaaggt gacactgacc
     3241 aagggagttc ctcagcagcc ccagcacctt cctgtggggc cccacatgta cccggctatt
     3301 cctccaggga tcaaaagcat ccaggggatt cacccagcca agaaggccat catgcatgga
     3361 cgaggccgag gagtggcagg tcccatgggc cggggacgac taatgccaaa taagcagaac
     3421 cttcgtgtgg tggaatgcaa gccacagccc tgtgtggtat ccgtggaagg cctgtcctca
     3481 tccaccactg atgtccagct gaagagcctg ctgatgtccg tggggcccat ccagagttta
     3541 cagatgcttc cccagcaacg gaaagccata gcaaagttca aggagccagc ccatgcacta
     3601 gcatttcagc agaaattcca caggcacatg attgatctgt cccacataaa tgtggccctg
     3661 attgtggagt gatcttgaat gggagaaatt gacctcatgc tgcacacact gtggaatttc
     3721 ttcaaggaag ctgt
//
