LOCUS       NM_001372344            4444 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 27 (Rbm27), transcript
            variant 1, mRNA.
ACCESSION   NM_001372344 XM_006222558 XM_006254677
VERSION     NM_001372344.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4444)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4444)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1 and CK842888.1.
            
            On or before Aug 29, 2019 this sequence version replaced
            XM_006254677.3, XM_006222558.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. The extent of this transcript is
            supported by orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.19663.1,
                                           SRR26643298.73884.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-265               JAXUCZ010000018.1  34524530-34524794
            266-384             JAXUCZ010000018.1  34536572-34536690
            385-509             JAXUCZ010000018.1  34540570-34540694
            510-601             JAXUCZ010000018.1  34547125-34547216
            602-795             JAXUCZ010000018.1  34547836-34548029
            796-1056            JAXUCZ010000018.1  34548877-34549137
            1057-1350           JAXUCZ010000018.1  34550376-34550669
            1351-1485           JAXUCZ010000018.1  34554449-34554583
            1486-1650           JAXUCZ010000018.1  34562051-34562215
            1651-1800           JAXUCZ010000018.1  34565786-34565935
            1801-1945           JAXUCZ010000018.1  34567719-34567863
            1946-2099           JAXUCZ010000018.1  34568552-34568705
            2100-2396           JAXUCZ010000018.1  34569715-34570011
            2397-2540           JAXUCZ010000018.1  34571741-34571884
            2541-2660           JAXUCZ010000018.1  34573502-34573621
            2661-2735           JAXUCZ010000018.1  34574767-34574841
            2736-2900           JAXUCZ010000018.1  34574961-34575125
            2901-3005           JAXUCZ010000018.1  34578792-34578896
            3006-3194           JAXUCZ010000018.1  34579004-34579192
            3195-3305           JAXUCZ010000018.1  34582655-34582765
            3306-4426           JAXUCZ010000018.1  34583999-34585119
            4427-4444           CK842888.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..4444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..4444
                     /gene="Rbm27"
                     /note="RNA binding motif protein 27"
                     /db_xref="GeneID:361317"
                     /db_xref="RGD:1311966"
     exon            1..265
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..3389
                     /gene="Rbm27"
                     /note="isoform 1 is encoded by transcript variant 1;
                     RNA-binding protein 27"
                     /codon_start=1
                     /product="RNA-binding protein 27 isoform 1"
                     /protein_id="NP_001359273.1"
                     /db_xref="GeneID:361317"
                     /db_xref="RGD:1311966"
                     /translation="MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKE
                     LKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEV
                     FQEPAEEERDVRKKKYPSPQKSRSESSERRTREKKREDGKWRDYERYYERNELYREKY
                     DWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPV
                     SAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPK
                     RRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMP
                     PMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLIN
                     SRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPP
                     LLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFF
                     SRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAIS
                     GLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKF
                     GTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQ
                     SSAQILLQQQHTLSHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGA
                     YVLNKVPVKHRLGHATTNQSDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAP
                     SKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIECQKMLISKLEKNKNMK
                     PEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRL
                     SSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGRGRGSLNHMVVD
                     HRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHKPKVPSISTETEEEEV
                     KEEETETSDLFLHDDDDEDEDEYESRSWRR"
     exon            266..384
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            385..509
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            510..601
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            602..795
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            796..1056
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1350
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1351..1485
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1650
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1800
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1801..1945
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            1946..2099
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2100..2396
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2397..2540
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2541..2660
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2661..2735
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2736..2900
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            2901..3005
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            3006..3194
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            3195..3305
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
     exon            3306..4427
                     /gene="Rbm27"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcccgccca cctgggcctc cgggctaggt tgagtggggc tcttgggtta gttcctgtta
       61 ggccccggcc cagggagtag gtgaagtcta taagatgccc ggtgggtcag ggcactcgga
      121 gctgtgaggg aacgtgaggc ggcgtagagc ggagacccgc ggcgggcctt aggaggagcg
      181 gcggccgagc ccgccttccc tgcaccatgc tcatagaaga tgtggatgcc ctcaagtcct
      241 ggctggccaa gttactggag ccgatatgtg atgctgaccc ttcagcccta gccaactatg
      301 ttgtagcact ggtcaagaag gacaaacctg agaaggaatt gaaagccttt tgtgctgacc
      361 aacttgatgt ctttttacaa aaagagactt caggttttgt ggacaaacta tttgaaagtc
      421 tttatactaa aaactacctt ccaccattgg aaccagttaa acctgagcca aaaccactag
      481 tccaagaaaa agaagaaatt aaagaagagg tatttcaaga gccagcagaa gaagaacgag
      541 atgttagaaa gaagaaatat cctagtcccc agaagagtcg ttcagaatct agtgagcgaa
      601 ggacacgtga gaagaaaaga gaagatggca agtggagaga ctatgagcgg tactatgagc
      661 ggaacgagct gtaccgggag aagtatgact ggagaagggg caggagcaag agcaggagta
      721 agagccgagg cttgagtcgg agtagaagcc ggagcagggg ccgcagcaaa gaccgggatc
      781 caaataggaa cgttgagcac agggaaagat caaagtttaa gagtgaaaga aatgacctgg
      841 agagctctta tgtgcctgtg tctgctccac ctcccaactc ttctgagcag tattcctctg
      901 gggcacagtc tattcccagc actgtcactg tgattgcacc tgcgcaccat tctgagaaca
      961 caaccgagag ctggtccaat tactataaca atcatagctc ttccaattct tttggtcgaa
     1021 acccaccacc aaagagacgc tgcagagatt atgatgaaag aggattttgt gtacttggtg
     1081 acctttgtca gtttgatcat ggaaatgatc ctctagttgt tgatgaagtt gctctgccaa
     1141 gtatgattcc tttcccaccc cctcctcctg ggcttcctcc tccaccacct cccggaatgt
     1201 taatgcctcc aatgccaggc ccaggcccag gccctggtcc tggccctggc cctggtcccg
     1261 gcccaggccc aggccctggc catagtatga gacttcctgt tcctcaagga catggtcagc
     1321 ctccaccttc tgttgtgctt cccataccaa gacctcccat ttcacagtca agcttaataa
     1381 acagccgtga ccagcctgga acaagtgcag tgcccaatct tgcaccagtg ggagcaagac
     1441 tacctcctcc tttaccccag aacctccttt atacagtatc agaaagacag cccatgtatt
     1501 ctcgtgaaca tggtgctgct gcatctgagc gacttcagtt ggggacaccg cctcctctgt
     1561 tggcagctcg tttggtgcca cctcgaaacc tcatgggatc ctccattggg tatcatacct
     1621 cagtctccag ccccacccct ctggtcccag atacatatga accagatggt tataatcctg
     1681 aagcacctag tatcaccagt tctggtagat ctcagtacag acagttcttt tcaagagcac
     1741 agacacagcg tcccaacctg attggcctca catctggaga tatggatgca aatccaagag
     1801 ctgctaatat tgtcatccag actgaaccac cagttcctgt ttcaattaat agcaacatca
     1861 ccagagtagt tctggaacca gagagccgaa agagagctat tagtggtttg gaagggcccc
     1921 ttacaaagaa gccttggctg ggaaaacaag ggaacaacaa tcagagtaaa ccaggcttct
     1981 taaggaagaa tcagtacaca aacaccaaat tagaagtgaa aaaaattccc caggaattga
     2041 acaacattac caagctcaat gaacacttca gcaaatttgg aaccatagtt aatatccagg
     2101 ttgcttttaa aggtgatcca gaagcagcac tcatccagta ccttaccaat gaggaggcca
     2161 ggaaagccat ttctagcaca gaagctgttt tgaacaatcg gttcattcga gtcctatggc
     2221 acagagagaa caatgagcaa ccagcactcc agtcctcagc acagattctc ctgcagcagc
     2281 aacataccct gagtcacctt tcacagcagc accacaacct accacagcat cttcatccgc
     2341 agcaggtgat ggtaacccag tcttccccct cttcagtcca cggaggcatc caaaagatga
     2401 tgggcaaacc acagacctct ggtgcctatg ttcttaacaa agtacctgtt aaacaccgtc
     2461 ttggacatgc aactactaac cagagtgaca catctcactt gctaaatcag actggtggtt
     2521 cttctgggga cgattgcccg gttttttcta ctccaggcca tccaaaaaca atttacagtt
     2581 cctcgaactt aaaggcacct tcaaaacttt gttcagggtc taaatctcat gatgttcaag
     2641 aagtgcttaa gaagaaacag gaagctatga agttacagca agacatgagg aaaaagagac
     2701 aagaaatgtt ggaaaagcag atagaatgcc agaagatgct gatctctaaa ctagaaaaaa
     2761 acaaaaacat gaaaccagaa gaaagagcaa acataatgaa gaccttgaaa gaactgggag
     2821 agaagatctc acaattgaag gatgaattaa aaacatcttc tgcagtctcc acaccatcta
     2881 aagtaaagac aaaaacagag gcccagaagg aattgttgga cacagaactg gacctccaca
     2941 agaggctctc ctcaggagaa gatacaacag agttacgcaa aaagctcagt cagttacaag
     3001 tcgaggctgc cagattgggt attttacctg tggggcgagg aaagaccatg tcctctcaag
     3061 gccgaggaag aggccggggt cgaggaagag ggaggggctc actgaatcac atggtggtgg
     3121 accaccgccc caaagcactc ccagctggag ggttcattga ggaggaaaag gaggagttgc
     3181 tccagcattt ctcagctaca aaccaatcgt ctaaattcaa agaccgtcgg ctacagatat
     3241 cgtggcacaa gcccaaggta ccgtctatat ctactgagac tgaggaagaa gaagtcaaag
     3301 aagaggaaac agaaacctca gatttgtttt tgcatgatga tgatgatgaa gatgaagatg
     3361 aatatgagtc tcgttcgtgg cgaagatgaa atttgatgcg agttgtgtaa tttttagaaa
     3421 tattgtttag aagaacaact ttttagaatt atttaaagaa gtcaatgagc caaaaaaaat
     3481 tttttttctc ttcaacacag taggtttaag gacagcaagt tgctattcaa acacatctca
     3541 taattgtctg tgatatcaaa tcaccagagg ccgtgacttt acacagttgt gaagacccac
     3601 aggagtgacc ggattctcta gaaccttacc ctccacacca tctgcttctg ctcttggtgc
     3661 tggattcagt gtaaagacag ggtgttcaga aattttattt tggattataa atctgctgat
     3721 aaaaatttca ttaaatgtca aaatcgcctg gaatctctta actcttagct attatggatg
     3781 ggtcgtcaga cagttggaga tgcttgtaat ttaaatacct tttcctttca agaatgatct
     3841 tggaagaaaa gtaaatttaa tttttttttt ttaaacaatg gaagaaccca ctttataagt
     3901 cagtcttttt cagagtttat gtgtggcaaa gctgcagcaa aaccaccgtc tctgttccca
     3961 gaagctgcag agcacaaagc tggctctgct gcgtcctctc ctcgctcaca cctgccctgg
     4021 ggcttctgtt ttgaaatgtg ctgggcattg cctcagttgt cctcctaccc cttttaaata
     4081 aacctcattt tgccttttgc ccttttactt attcccttgt atctttttca ctccttttga
     4141 ttaataagcc tgactttttg aaatgagtga ttcagttggg caatcaagaa tcagtcatca
     4201 gtaaaaggtt taaaccagca cctttgtaaa gaagtgatgc tttgatgaaa ataaaggcgg
     4261 aattttaggg cacagagata ctggcttccc tcccctttaa agcttcagcg tagttacagt
     4321 taccccaaag gctgacggtc tcttctgcat tgtaatgatg atggtgaggt gctgaggtgg
     4381 ggattaggag tctggatatg ctagtaataa atgagattct aacttgaaaa aaaaaaaaaa
     4441 aaaa
//
