LOCUS       NM_001277160            3502 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 26 (Rbm26), mRNA.
ACCESSION   NM_001277160 XR_005470 XR_009612
VERSION     NM_001277160.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3502)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 3502)
  AUTHORS   Hendrickx,A., Beullens,M., Ceulemans,H., Den Abt,T., Van Eynde,A.,
            Nicolaescu,E., Lesage,B. and Bollen,M.
  TITLE     Docking motif-guided mapping of the interactome of protein
            phosphatase-1
  JOURNAL   Chem Biol 16 (4), 365-371 (2009)
   PUBMED   19389623
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1, FN801746.1 and BC082039.1.
            
            On or before Mar 16, 2013 this sequence version replaced
            XR_009612.3, XR_005470.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. There are no full-length rat
            transcripts supporting this exon combination; inferred from partial
            rat transcripts, BQ782310.1, CB742518.1, and BC082039.1, and
            alignment to mouse BC049360.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-429               JAXUCZ010000015.1  88378258-88378686   c
            430-548             JAXUCZ010000015.1  88355662-88355780   c
            549-685             JAXUCZ010000015.1  88354985-88355121   c
            686-774             JAXUCZ010000015.1  88350294-88350382   c
            775-992             JAXUCZ010000015.1  88348790-88349007   c
            993-1253            JAXUCZ010000015.1  88347631-88347891   c
            1254-1269           FN801746.1         34-49
            1270-3487           BC082039.1         1-2218
            3488-3502           JAXUCZ010000015.1  88307637-88307651   c
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q22"
     gene            1..3502
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /note="RNA binding motif protein 26"
                     /db_xref="GeneID:306137"
                     /db_xref="RGD:1308297"
     exon            1..429
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     CDS             359..3340
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /codon_start=1
                     /product="RNA-binding protein 26"
                     /protein_id="NP_001264089.1"
                     /db_xref="GeneID:306137"
                     /db_xref="RGD:1308297"
                     /translation="MVSKMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDK
                     SEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPEQPSSGSLKVDFLQHQE
                     KDIKKEELTKEEEREKKFSRRLNHSPPQSSSRYRDNRSRDERKKDDRSRKRDYDRNPP
                     RRDSYRDRYNRRRGRSRSYSRSRSRSWSKERLRDRDRDRSRTRSRSRTRSRERDLVKP
                     KYDLDRTDPLENNYTPVSSVSNISSGHYPVPTLSSTITVIAPTHHGNNTTESWSEFHE
                     DQVDHNSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNLPGMLPFPAQ
                     PPVVEGPPPPGLPPPPPILTPPPVNLRPPVPPPGPLPPSLPPVTDDISYSLVLTGPPP
                     PLPPLQPSGMDAPPNSATSSVPTVVTTGIHHQPPPAPPSLFTADTYDTDGYNPEAPSI
                     TNTSRPMYRHRVHAQRPNLIGLTSGDMDLPPREKPPNKSSMRIVVDSESRKRTIGSGE
                     PGVPTKKTWFDKPNFNRTNSPGFQKKVQFGNENTKLELRKVPPELNNISKLNEHFSRF
                     GTLVNLQVAYNGDPEGALIQFATYDEAKKAISSTEAVLNNRFIKVYWHREGATHQLQT
                     TSPKVIQPLVQQPILPVVKQSVKERLGPVPSGTVEPAEAQSATSELPQVLSTSTGLTK
                     TVYNPAALKAAQKTLLVSTPAVDNNEAQKKKQEALKLQQDVRKRKQEILEKHIETQKM
                     LISKLEKNKTMKSEDKAEIMKTLEILTKNITKLKDEVKSTSPGRCLPKSIKTKTQMQK
                     ELLDTELDLYKKMQAGEEVTELRRKYTELQLEAAKRGILSSGRGRGIHTRGRGAAHGR
                     GRGRGRGRGVPGHAVVDHRPRALEISAFTESDREDLLPHFAQYGEIEDCQIDDSSLHA
                     IITFKTRAEAEAAAVHGARFKGQDLKLAWNKPVANMSAVETEEAEPDEEEFQEESLVD
                     DSLLQDDDEEEEDNESRSWRR"
     exon            430..548
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            549..685
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            686..774
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            775..992
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1253
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1493
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1664
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1805
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            1806..1917
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2077
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2078..2242
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2243..2374
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2375..2500
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2501..2575
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2576..2743
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2744..2848
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            2849..3049
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            3050..3136
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            3137..3250
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
     exon            3251..3502
                     /gene="Rbm26"
                     /gene_synonym="RGD1308297"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctctgccgc gttgccagca agcacctaat cccaaagctg agagaaaagt ccgggtctga
       61 gcgcgttcgg ctctccttcg ggaagattca ctggggagcg gggcaggggg gagggcccgg
      121 caaacggttg ctgcctcagc ctgggccggg gtccgcagag gggaagctcc cggtacccgg
      181 tgggcgcgtg gcctgcggcg gccccgccga ggtgctcgcc gaccgcggct cgcgggaact
      241 tgccaccggc acctcccacc gcggcccacg cggacggcgc gcggaggagg gggcggcggc
      301 ggcggcggcg gcgacctggg cgagcgcagg agtgtgaccg gcctcggggc cgcggtggat
      361 ggtttctaag atgatcattg aaaacttcga ggcgctcaaa tcctggctca gcaagaccct
      421 cgagcccatc tgtgatgctg atccatcagc cctagcaaaa tatgttttgg ctctggtaaa
      481 aaaagacaaa agtgaaaaag aattaaaggc gttatgtatc gatcagcttg atgtatttct
      541 tcagaaagag acacaaatat ttgttgaaaa acttttcgat gctgtgaata caaagagtta
      601 tctacctcct ccagagcagc cgtcgtcagg aagcctgaag gtagacttcc ttcagcacca
      661 agaaaaagat ataaaaaagg aagagctcac aaaggaggaa gagcgagaga agaagttttc
      721 cagaaggttg aatcacagtc ctccgcagtc aagctcccga tacagagaca acagaagccg
      781 tgatgagagg aaaaaagatg atcgttctcg aaaaagagat tatgatcgaa accctcctcg
      841 aagagattca tacagagacc ggtataacag aaggcgaggg aggagtcgca gttacagcag
      901 gagtcgaagt cgaagctgga gtaaagagag gcttcgtgac agggatagag atcgaagcag
      961 gacaaggagc agaagcagaa cgcgaagcag ggaaagggac ctggtgaaac ctaaatatga
     1021 cctggataga actgatccgt tagaaaataa ctatacacca gtctcttcag tatcgaacat
     1081 ttcgtctggc cactatcctg taccgacttt gagcagcacc ataaccgtga ttgctcctac
     1141 tcatcatggc aataacacta ccgaaagttg gtctgaattt catgaagacc aggtggacca
     1201 caactcttac gtaaggccac caatgccaaa gaaacggtgt agagattatg atgaaaaggg
     1261 gttttgtatg agaggagaca tgtgtccttt tgatcacggg agtgacccag tcgttgtaga
     1321 agatgtgaat ttgccaggca tgctgccttt cccagcgcag ccgcctgttg ttgaaggacc
     1381 acctcctcct gggctgcccc cacctcctcc aattctgaca cccccacctg tgaatcttag
     1441 accccctgtg ccacctccag gtccattacc acccagtctg ccacctgtca cagatgatat
     1501 ttcttattct ttggttttga caggaccacc tcctccactt cctcctttgc agccatctgg
     1561 catggatgcg ccacctaact ctgcgaccag ctctgttcct actgtggtga caaccggcat
     1621 ccaccaccag cctcctcctg ctccaccctc tctctttact gcagatacat atgatacaga
     1681 tggctacaat cctgaagctc caagcatcac aaacacttcc agacctatgt atagacacag
     1741 agtccatgca caaaggccta acttgatagg actaacatct ggggacatgg atttaccacc
     1801 tagagagaag cctcctaata aaagcagcat gaggatcgta gtggactcag aatcgaggaa
     1861 gagaactatt gggtctgggg agcctggagt ccctacaaag aagacgtggt ttgataaacc
     1921 aaattttaat aggacaaaca gcccgggttt ccagaagaag gttcaatttg gaaatgaaaa
     1981 tactaaactt gaacttagga aagttcctcc agagttaaat aatatcagca aactcaatga
     2041 acattttagt cgatttggaa cattggttaa cttacaggtt gcctataatg gtgatcctga
     2101 aggcgccctc atccaatttg caacgtatga tgaagcaaag aaagcaatct caagcacaga
     2161 agcagtatta aataatcgct ttattaaggt ttattggcac agagaaggag ccactcacca
     2221 gttacaaact acttcaccaa aggtaataca gcctttagtc cagcagccca ttttacctgt
     2281 tgtgaagcag tcagtcaaag agcggctggg tcctgtacct tcaggtactg ttgaaccggc
     2341 agaagcccag agtgctactt cagaacttcc ccaggtgttg tctacatcta ctggtcttac
     2401 aaaaacggtg tacaatccag ctgctttgaa ggctgcacaa aaaaccttac tagtttctac
     2461 ccctgcagtt gataataatg aagcacagaa aaagaaacag gaggcactga aacttcagca
     2521 ggatgtaaga aaaaggaagc aagaaatttt agaaaagcac attgaaacac agaagatgct
     2581 aatttcaaaa ctagaaaaaa acaaaaccat gaaatctgaa gataaagcag aaataatgaa
     2641 aacattagag attttgacaa aaaatattac caagttgaaa gatgaggtta aatctacatc
     2701 tcctggacgc tgtcttccaa aaagtataaa aacaaagact cagatgcaga aagaattgct
     2761 tgacacagaa ttggatttat ataagaagat gcaggctgga gaagaagtca ctgaacttag
     2821 gagaaaatat acagaattac agcttgaagc tgctaaaaga ggaatccttt catctggccg
     2881 aggtagagga attcatacga gaggtcgagg tgcagctcat ggacggggca ggggtcgagg
     2941 tcgaggccgc ggtgtacctg ggcatgctgt agtggatcac cgaccccgag cactagagat
     3001 ctctgcgttt acagagagcg acagagaaga ccttcttcct cactttgcgc aatatggtga
     3061 aatcgaggat tgtcagattg atgactcttc acttcatgca ataattacat tcaagacaag
     3121 agcggaagca gaagctgctg cagttcatgg agctcgcttc aaagggcagg atttaaagct
     3181 ggcatggaat aaacccgtag ctaatatgtc agccgtggag acggaagaag ccgagcctga
     3241 cgaagaggaa tttcaggaag agtctttggt ggatgactca ttacttcaag atgatgacga
     3301 agaagaagag gacaatgaat ctcgttcttg gagaagatga tttgactgat cattgatctg
     3361 catatgctag aactctacct gtgtttcatt agtattatct aatgtacttt tacatatttg
     3421 taaaaacaat ttttggtaaa atatgatgac gatggatttc acaaatagat aaaagagaag
     3481 aaaactacct tctgatcttg ta
//
