LOCUS       NM_001371959            4098 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 19 (Rbm19), mRNA.
ACCESSION   NM_001371959 XM_003751194
VERSION     NM_001371959.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 4098)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 4098)
  AUTHORS   Lorenzen,J.A., Bonacci,B.B., Palmer,R.E., Wells,C., Zhang,J.,
            Haber,D.A., Goldstein,A.M. and Mayer,A.N.
  TITLE     Rbm19 is a nucleolar protein expressed in crypt/progenitor cells of
            the intestinal epithelium
  JOURNAL   Gene Expr Patterns 6 (1), 45-56 (2005)
   PUBMED   16027046
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1 and CA503633.1.
            
            On Jul 29, 2019 this sequence version replaced XM_003751194.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.15817.1,
                                           SRR26643286.35489.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000012.1  42111363-42111530   c
            169-351             JAXUCZ010000012.1  42108662-42108844   c
            352-471             JAXUCZ010000012.1  42107628-42107747   c
            472-510             JAXUCZ010000012.1  42107430-42107468   c
            511-715             JAXUCZ010000012.1  42107098-42107302   c
            716-972             JAXUCZ010000012.1  42104293-42104549   c
            973-1053            JAXUCZ010000012.1  42103257-42103337   c
            1054-1132           JAXUCZ010000012.1  42102234-42102312   c
            1133-1204           JAXUCZ010000012.1  42100842-42100913   c
            1205-1408           JAXUCZ010000012.1  42099813-42100016   c
            1409-1539           JAXUCZ010000012.1  42098632-42098762   c
            1540-1658           JAXUCZ010000012.1  42096788-42096906   c
            1659-1755           JAXUCZ010000012.1  42096426-42096522   c
            1756-1866           JAXUCZ010000012.1  42095508-42095618   c
            1867-2067           JAXUCZ010000012.1  42094749-42094949   c
            2068-2188           JAXUCZ010000012.1  42093932-42094052   c
            2189-2361           JAXUCZ010000012.1  42087479-42087651   c
            2362-2422           JAXUCZ010000012.1  42087254-42087314   c
            2423-2502           JAXUCZ010000012.1  42086584-42086663   c
            2503-2558           JAXUCZ010000012.1  42084815-42084870   c
            2559-2675           JAXUCZ010000012.1  42084149-42084265   c
            2676-2781           JAXUCZ010000012.1  42051031-42051136   c
            2782-2902           JAXUCZ010000012.1  42039842-42039962   c
            2903-4080           JAXUCZ010000012.1  42026278-42027455   c
            4081-4098           CA503633.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..4098
                     /gene="Rbm19"
                     /note="RNA binding motif protein 19"
                     /db_xref="GeneID:304512"
                     /db_xref="RGD:1308928"
     exon            1..168
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..3000
                     /gene="Rbm19"
                     /codon_start=1
                     /product="probable RNA-binding protein 19"
                     /protein_id="NP_001358888.1"
                     /db_xref="GeneID:304512"
                     /db_xref="RGD:1308928"
                     /translation="MSRLIVKNLPNGMKEDRFRQLFAAFGTLTDCSLKFTKEGKFRKF
                     GFIGFKSEEEAQAALNHFHRSFIDTSRITVEFCKSFGDPSKPRAWSKHAQKPSQPKQP
                     SQDSIPSDTKKDKKKKKVPSDLEKLKEDAEFQEFLSIHQKRTQVATWANDALEAELPK
                     AKAKPSSDYLNFDSDSNSDSGQESEEEPAGEDGEEEQGLQPKAAVQKELSDMDYLKSK
                     MVRAEVSSEDEDKEDSEDEAVNCEEGSEAEEEEGSPTCPAQQAGVNRGAVLGSLRPQE
                     AAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNKTG
                     YVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKSSSAPWQGRTLGEH
                     EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF
                     MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEANQEANAPGSSYKKKKEAMDKANSS
                     SSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRMALGETQLVQEVRSFL
                     IDNGVCLDSFSQAAAERSKTVILAKNLPAGTLAAELQEIFSRFGSLGRVLLPEGGITA
                     IVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQPEQPAQKAEAE
                     QETVLNPEGEKALVEGAEASMGKMEEEEEEEEEEEEEESIPGCTLFIKNLNFNTTEET
                     LKEVFSRVGAVKSCTISKKKSKAGVLLSMGFGFVEYKKPEQAQKALKRLQGHIVDGHK
                     LEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTV
                     RLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQAL
                     RRKTAKHFQEPPKKKRSAVLDGILEQLEDGDDSDSEETLQL"
     exon            169..351
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            352..471
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            472..510
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            511..715
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            716..972
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1053
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1132
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1204
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1408
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1539
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1658
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1659..1755
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1756..1866
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            1867..2067
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2188
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..2361
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2362..2422
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2423..2502
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..2558
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2559..2675
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2676..2781
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2782..2902
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
     exon            2903..4081
                     /gene="Rbm19"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacttccgg gtggaacgcg gcggggccac gtgactcgct aaagatggcg gcgcccagtg
       61 tggcggcgtg aaagttgtgg gtagtcgccg tcgcggggat cttgagtcag aagcgtgggg
      121 aacctgagag ccatgtcgcg cctgatcgtg aagaacctcc cgaatgggat gaaggaggac
      181 cgattcaggc agctgtttgc agccttcggc acactgactg actgcagcct caagttcacc
      241 aaagaaggca agttccggaa gttcggtttc ataggtttca agtcagagga ggaggcccag
      301 gctgcactga accatttcca ccggagcttc attgacacgt cccggatcac ggtagaattc
      361 tgcaagtcct ttggagaccc atcaaagccc cgagcttgga gcaaacatgc ccagaagcca
      421 agccagccca agcagccatc acaagactcc attccctcag acactaaaaa agacaagaag
      481 aagaaaaagg tacccagtga cctggagaag ctgaaggagg atgccgagtt ccaggagttc
      541 ctgtcaattc accagaagag gacccaagtg gccacctggg caaacgacgc cttggaggct
      601 gagctcccaa aagcaaaagc caagccgtca agtgactatc tgaacttcga ctctgactcc
      661 aactccgact cagggcagga gagtgaggag gagccagctg gagaggacgg tgaagaggaa
      721 caaggcctgc agccaaaggc ggccgtgcag aaggagctgt cagacatgga ctacttgaaa
      781 tccaagatgg tgcgggccga ggtgtcctct gaggatgagg acaaagagga cagtgaggac
      841 gaggcggtga actgtgaaga aggaagtgag gctgaggaag aggagggctc ccccacctgc
      901 ccagcccagc aagcgggtgt gaaccgggga gctgtgcttg ggagcctgag gccccaggaa
      961 gctgccggca aggtagagaa gccagccagc cagaaggaac ctactacccc ctacaccgtg
     1021 aagctccggg gagccccgtt taatgtcact gagaaaaacg tcttggaatt cctagctcca
     1081 ctgaagccag tggccattcg aatagtgaga aatgctcacg ggaataaaac agggtatgtc
     1141 ttcgtggacc tcagtagcga agaagaagta aagaaagctc ttaagtgcaa ccgtgaatac
     1201 atgggtgggc gctatatcga ggtgttcagg gaaaagcagg cctccgccgc ccgtggtgcc
     1261 ccaaagagca gctctgcacc ctggcaaggc cgaacgctcg gcgagcatga ggaggaggaa
     1321 gacctggcag actctgggag gctttttgta cggaacctgt cctacaccag ctctgaggag
     1381 gacctggaga agctgttctc tgcctatggt cccctgtcag aactccacta ccccattgac
     1441 agcctgacca agaagccaaa aggctttgcc ttcgtcacct tcatgttccc tgagcatgct
     1501 gtgaaggcct atgctgaggt agacgggcag gtattccagg gcaggatgct ccacgtccta
     1561 ccatccacca tcaagaaaga agccaaccag gaggccaacg ccccaggatc ctcttacaag
     1621 aagaagaagg aagccatgga caaagccaac agctccagct cccacaactg gaacacgctg
     1681 tttatggggc cgaatgccgt ggccgatgcc attgcacaga agtacaacgc caccaagagc
     1741 caagtgtttg accatgagac caagggcagt gtggctgtgc gtatggctct gggggagacc
     1801 cagctggtcc aggaggttcg aagcttcctt attgacaatg gtgtctgcct ggactctttc
     1861 agccaggctg cagcggagcg aagtaagacg gtgatcctgg ctaagaacct cccagcaggc
     1921 acactagcag cagaactaca ggagatcttc agccgtttcg gcagcttggg ccgagtgctc
     1981 ctgcctgaag gtggcatcac ggccattgta gagttcctgg agccactgga ggcccgcaag
     2041 gctttcaggc acctggccta ttccaagttc caccatgtcc ccctgtacct ggagtgggct
     2101 ccaattggtg tcttcggcgc agccccccag aagaaagatt cccaacctga gcagcctgca
     2161 cagaaagctg aggcagagca ggagactgta ctgaaccctg aaggtgaaaa ggctttggtg
     2221 gaaggagcag aggcctccat gggcaaaatg gaagaagagg aggaggaaga agaggaagag
     2281 gaggaagaag aaagcattcc agggtgcact ttgttcatta agaacctcaa cttcaacacc
     2341 acagaggaga ccctgaagga agtgttttcc agagtaggag ctgtgaagag ctgcaccatc
     2401 tccaagaaga agagtaaagc aggagtgcta ctgtcgatgg ggttcgggtt tgtggaatac
     2461 aagaagccag aacaggccca gaaagcactc aagcggctcc agggtcacat tgtggacggc
     2521 cataagctgg aagtacggat ctctgaacgg gccaccaagc ctgccttgac atccactcgg
     2581 aagaagcagg tccccaagaa gcagacgacc tccaagatcc tggtgcggaa tatccccttc
     2641 caggccaacc agagggagat ccgggagctt ttcagcacct tcggggaact gaagacagtg
     2701 cgcctgccaa agaagatgac agggaccggc gctcacaggg gcttcggctt tgtggacttc
     2761 atcaccaagc aggacgcaaa gaaagccttc aatgcactgt gtcatagcac gcacttgtac
     2821 ggccgcaggc tggttctgga atgggcagac tcggaggtga ctgtgcaggc cctaaggagg
     2881 aagacagcca aacacttcca agagccccca aagaagaagc ggtctgcagt gttggatggg
     2941 atcctggagc agctggaaga tggggacgac agtgacagcg aggaaactct ccagctgtga
     3001 gctggcactg ccagggtgtg tgactccagg gccccggggc cgggcagtgc cttacaggag
     3061 gtctccatgg gtcagcacca aaggcaacaa aagctcgtgg caagtaccag atgcgagaac
     3121 aactcttctg cagactccgc cccagtggtg tgttgagagg ctgctgaccc agcacctgca
     3181 ctgggtaaca cttgtgagtg actccataag gaccttaggc ctggtatcct cctgtggcat
     3241 ggctggccac accctggccc cttttccctg aggagcagat tctaggatga gtgacagggt
     3301 gcacagccac tgtagagctc ccagcaggaa tgagctgctg tctgggtggg gacccacagc
     3361 tcagccccat ccaccagcta ccaggcccca accagccagg ctcctgcagc cctgcctcgc
     3421 cctctacagg actgctggcc agtggacgga gctggggacc cttctacctc atcagcaggg
     3481 ccccttccgg tcctcatgat gcatcattcc gagccctgat gccaggttca caggctgagc
     3541 tgcgctagca ccactgccag cccttgtagc tcaagtggag gccctgggag tcccaccaag
     3601 gcctcaccca caccagagcc tagcacacct ctccataaac gctgacgcac cgtcagccag
     3661 agaaggacat ggcatcagtc agagagcaag gccacagtcc ttcaacaccg tcctgcccca
     3721 gcaagaagcc taagacccat ctcatttcga cttcgaggac tgtctgttca gtgcaggtga
     3781 ctgtcatggc tgcctccaac ctcagccatc caaccaggaa gacctgagga gacagccctc
     3841 tcacctcaga gctgttgtca ccgagggctg acggtgcact ggacaggact ctgggcacca
     3901 ggctttccga ctttgtgaga gtcttggcct atgaatattt tgtgggcgtg aggtcctgct
     3961 tttcagagtg gcctggaccc tacacccggt tatcaaagct ggggctacac cctgtgggca
     4021 gggagggcac tttgttatag ttcaagggcg ctgaaaattt agcaataaat gtcagaacct
     4081 aaaaaaaaaa aaaaaaaa
//
