LOCUS       NM_001107838            2472 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 18 (Rbm18), mRNA.
ACCESSION   NM_001107838 XM_001080367 XM_231176
VERSION     NM_001107838.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2472)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474001.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001080367.1, XM_231176.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168896.1, CK475816.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..2472
                     /gene="Rbm18"
                     /note="RNA binding motif protein 18"
                     /db_xref="GeneID:311902"
                     /db_xref="RGD:1307411"
     exon            1..134
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
     exon            135..263
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..723
                     /gene="Rbm18"
                     /codon_start=1
                     /product="probable RNA-binding protein 18"
                     /protein_id="NP_001101308.1"
                     /db_xref="GeneID:311902"
                     /db_xref="RGD:1307411"
                     /translation="MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKL
                     LQRFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVR
                     WAHAQVKRYDHNKNDKILPISLEPSSSTEATQSNLSVTAKIKAIEAKLKMMAENPDAE
                     YPAAPVYSYFKPPDKKRTTPYSRTAWKSRR"
     exon            264..390
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
     exon            391..477
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
     exon            478..563
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
     exon            564..2472
                     /gene="Rbm18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgtagcgcg tcacgggcgg ccgggcggcg agcggtgttt cggcagaggt aacctcacgt
       61 ccctcgctcg gaccccagcg tcggaagctg ctttcggggc atgagctgag agggcacggc
      121 tccgaggcta gcggtatttt ttagagattg atggaagcag aaaccaaaac tcttcccctg
      181 gagaatgcat ccatcctttc agagggctct ctacaagaag gacaccgatt atggattggc
      241 aacctggatc ccaaaatcac agaataccac ctcctcaagc tcctccagag gttcggcaag
      301 gtgaagcaat tcgatttcct cttccacaag tcgggtgctt tggagggcca gccccgaggg
      361 tactgttttg ttaactttga gactaagcag gaagcagaac aagccatcca gtgtctcaat
      421 ggcaagctgg cgctgtctaa gaagctggtt gtgcgatggg cccacgctca ggtcaagaga
      481 tacgatcata acaagaatga taagatcctt cccatcagcc ttgagccatc ctcaagcact
      541 gaagctactc agtctaacct cagtgtcact gcaaagataa aggccattga agcaaagctg
      601 aagatgatgg cagagaatcc tgacgcagag tacccagcag cgcctgttta ttcctacttt
      661 aaaccgcctg ataaaaaaag gactactcca tactcgagaa cagcctggaa gtctcgaaga
      721 tgatggtcag gagttacaga gcagcagagg caatgtctgc accccagaag tccttagcct
      781 ctgtactttg taggtgtgga tggtaaccaa cagagcacag tcttgttagg ccggtgacgc
      841 agcgcgtttg ggtgttcata tggatgtgtc ttccctgaac tatgtgttga gttgagcatc
      901 atccagaata aataggaata agtccagact gtgatttgaa cactgagacg ctctagttgg
      961 ctgctttgtt tggatttgta actctagaaa cacagttgcc agagagagaa acaagcatac
     1021 aaagttgtta cttaaatcag gaaactaaat ttattaacat ccaccaaaaa cttttggcat
     1081 ttttatgtgt acacatctct tcaacataaa caaaaataag gggagggtgg gaagtgagag
     1141 acattttcag tcgtttttag aactgtttga gagtgttctg cggaaatcct tcagtttggc
     1201 taaaaagaga attcttggca aaaagcagcc gaccccttga gtgaatgttg tagcaatctg
     1261 tttcagaatt atgcttctta tttccaaacc tcaattagga aaacgtggtg tatgtcttaa
     1321 aattgtttat gtcaacaaag tgcagaatca catttagcat tttataccac agcagatact
     1381 ctatttgaaa atccagcctt tattctctgg caatcatggt tttgaatatg aaggaccttg
     1441 ccgtctgtaa taccaatgtt attactcacc tggatcttag tacgcgtgca tgggatcgct
     1501 ttatagcatg acgttgttcc agttagaatt gtatcatgat cagtctaagt agaaaagcgg
     1561 aatttctctg aaaacctcaa gtttactgta ttggccgctc tcagccattg ctctctcaca
     1621 gttgtgtgtg ggactgcagg aagcggctga gtggcctttt tgcagctgag aagggaagtg
     1681 cagtgagcag caggagtcag cagccagtgc tcaggcacca agaccatagc aaccacacgg
     1741 gttctgtcct ttcggaagac tgcacagcct aaaagtgagc gttattttga cagcatgaca
     1801 gttagatctc cagatatcat tgtctctttg ggcacgctga atatggtagt atagagacat
     1861 acataaatgg gcagccttgg gaatgtgttt gttcagctca gggctgactg ctttggtgcc
     1921 aggcctgaca gactgtttca ttagcagcac cattcttcac tgagcagatc actgctgctc
     1981 accgcaggtg ccacccatga tgacttgggt tgcagaggct caagtcttcc tggggttaag
     2041 acgcttgacc tctggggttt cagaatccac agaactgctt cagaggaatt cttactgctt
     2101 ttcccaaggc cagtcttttt tagctatctt tagatactga ataagtccca gatttatcag
     2161 ttgtgtatat ctgtgataca ggaaactctt ccacttggga gctcgttcag ggaagtggga
     2221 acaccggctc ccatttgtct ggtgacttct tagaatatag aattcaccat ttcatcctta
     2281 agttctcaaa gggttgtagg tggagtagaa tttgatgcca atagccttct atttttaata
     2341 ggaacctaga gaatacttta ggattatcta gagttgtttc tttagaatct agaattattt
     2401 atttgtattt aaacaatgtc tatgatttgt accaattctt acccctttat gtgaataaat
     2461 gcaagacggt at
//
