LOCUS       NM_001399320            3066 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 15B (Rbm15b), mRNA.
ACCESSION   NM_001399320 XM_039082620
VERSION     NM_001399320.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Patil,D.P., Chen,C.K., Pickering,B.F., Chow,A., Jackson,C.,
            Guttman,M. and Jaffrey,S.R.
  TITLE     m(6)A RNA methylation promotes XIST-mediated transcriptional
            repression
  JOURNAL   Nature 537 (7620), 369-373 (2016)
   PUBMED   27602518
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3066)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3066)
  AUTHORS   Uranishi,H., Zolotukhin,A.S., Lindtner,S., Warming,S., Zhang,G.M.,
            Bear,J., Copeland,N.G., Jenkins,N.A., Pavlakis,G.N. and Felber,B.K.
  TITLE     The RNA-binding motif protein 15B (RBM15B/OTT3) acts as cofactor of
            the nuclear export receptor NXF1
  JOURNAL   J Biol Chem 284 (38), 26106-26116 (2009)
   PUBMED   19586903
REFERENCE   5  (bases 1 to 3066)
  AUTHORS   Hiriart,E., Gruffat,H., Buisson,M., Mikaelian,I., Keppler,S.,
            Meresse,P., Mercher,T., Bernard,O.A., Sergeant,A. and Manet,E.
  TITLE     Interaction of the Epstein-Barr virus mRNA export factor EB2 with
            human Spen proteins SHARP, OTT1, and a novel member of the family,
            OTT3, links Spen proteins with splicing regulation and mRNA export
  JOURNAL   J Biol Chem 280 (44), 36935-36945 (2005)
   PUBMED   16129689
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jan 6, 2022 this sequence version replaced XM_039082620.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR23984936.913530.1,
                                        SRR21887620.693445.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3066              JAXUCZ010000008.1  116422309-116425374 c
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..3066
                     /gene="Rbm15b"
                     /gene_synonym="RGD1305937"
                     /note="RNA binding motif protein 15B"
                     /db_xref="GeneID:315988"
                     /db_xref="RGD:1305937"
     exon            1..3066
                     /gene="Rbm15b"
                     /gene_synonym="RGD1305937"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..2768
                     /gene="Rbm15b"
                     /gene_synonym="RGD1305937"
                     /codon_start=1
                     /product="putative RNA-binding protein 15B"
                     /protein_id="NP_001386249.1"
                     /db_xref="GeneID:315988"
                     /db_xref="RGD:1305937"
                     /translation="MKRQNERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGG
                     TKHPVPARARDKPRGSGGGGGHRDGRAAGDANHRASSGRSSGAPGGGGRTGKASGDPG
                     AGGASPRASPLPPPPPPPGAEPAGPGTTAAPEYKTLLISSLSPALPAEHLEDRLFHQF
                     KRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRG
                     GGSSRRSSSSSAAASTPPPGPPTPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRAR
                     HAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYSYQAVCEEDLMPEDDQRATRN
                     LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVA
                     MSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS
                     FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYEL
                     LTDGYTRHRNLDADLRVRDRTPPHLLYSDRDRTFLEGDWTSLSKSSDRRNSLEGYSRS
                     VRSRSGERWGADGDRSIAKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGGGQQSERG
                     SDRTPERSRKENHSSEGTKESGSNSLSNSRHSAEERSHHHHHHEAPDSSHGKKTRESE
                     RNHRTTEAEPKTLEEPKHETKKLKTLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGD
                     QGVISGLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLAIQSTP
                     SGPGAEGMPMVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPC
                     DFSQQYLQSALRTLGKLEEEHMVIVIVRDAA"
ORIGIN      
        1 gagtcctttt gtccaagatg gcggcgccgg gggcgctgcc tcctgggctg ccgccgctgc
       61 cgctctgagg gacccgcggg ccgcccgccc gccaagccgg cgcaatgaag cggcagaacg
      121 agcgagactc cagcccgagc gggcgtggct cgtcatcgtc cgccaagcgg ccgcgggagc
      181 gcgaacggga ggcagaggcg ggcgggcggc gagcagcgca caaggcctcc ggcggcacca
      241 agcacccggt tccagcgcgg gctcgtgaca agccccgcgg cagtggcgga ggcggcggac
      301 atcgcgacgg gcgcgctgct ggggatgcga atcaccgagc aagcagcggg cgctcctcag
      361 gcgcgcccgg aggcggagga cgcaccggca aggcctccgg ggacccgggt gctgggggcg
      421 cgtcgccccg cgcatctcca ctcccgccgc ccccgccgcc ccccggggcg gaacctgcgg
      481 gtcccggtac cacggcggct ccggagtaca agacgctcct catcagcagc ctgagccccg
      541 cgctgccggc cgagcacttg gaggaccggc tcttccacca gttcaagcgg ttcggtgaga
      601 tcagcctgcg cctgtcacac acaccggagc tgggccgcgt ggcctatgtg aacttccggc
      661 acccacagga cgcgcgtgag gcccgccagc acgccttggc ccgtcagctg ctgctctacg
      721 accgcccgct caaggtagag cccgtgtacc tgcgcggcgg cgggagcagt cggcgcagta
      781 gcagcagcag cgccgctgcc tccacgccgc ccccagggcc tcccacgccc gcggaccctc
      841 tgggctatct gcccctgcac gggggctacc agtacaagca gcgctctctg tctccggtag
      901 ccgccccgcc cctgcgggag ccccgtgcgc ggcacgccgc ggcagccttc gccctggatg
      961 ctgctgccgc ggctgccgtg ggactgtctc gggagcgagc cctggactat tacgggctgt
     1021 acgacgaccg cgggcgcccg tacagctacc aggccgtgtg cgaggaggac ctgatgccgg
     1081 aggatgatca gagagccact cgaaatctct tcatcgggaa cctggaccac agtgtatctg
     1141 aagtggagct tcgacgggcc ttcgagaagt atggcatcat tgaggaggtg gtcatcaaga
     1201 ggcctgcccg cggccaaggt ggtgcctatg ccttccttaa gtttcagaac ctggacatgg
     1261 cacacagggc caaggtggct atgtctggcc gggtgattgg cagaaaccct ataaagatag
     1321 gctacggcaa ggctaaccct accacccgcc tctgggtggg tggtcttgga cctaacacct
     1381 cgctggcggc cctggccaga gaattcgatc gctttgggag cattcggacc atcgatcacg
     1441 tcaaaggaga cagctttgcc tacatccagt acgagagcct ggatgcagcc caagctgcct
     1501 gtgctaaaat gaggggcttt cccttgggtg gtccagatcg caggctccgg gtggattttg
     1561 ccaaagcaga ggagactcga tatccccagc agtaccagcc ctcacctctc cctgtgcatt
     1621 atgagctgct cactgatgga tatacccggc atcgaaactt ggatgctgac cttagggtgc
     1681 gggacaggac ccctccgcac cttctgtatt cagatcgaga ccggaccttt ttggaagggg
     1741 actggaccag ccttagtaaa agttcagacc gcagaaacag cctggagggc tatagccgct
     1801 cagtgcgaag ccggagtggt gagcgctggg gggcagatgg ggaccggagc atagccaagc
     1861 cctgggaaga gagacgaaag cggaggagcc tttccagtga ccgcgggagg acaactcact
     1921 ccccttatga ggaacggagc aggaccaagg gtggggggca gcagtctgag cgaggctcgg
     1981 accgcacccc tgagcgtagc cgaaaggaga accactccag tgaagggacc aaggagtcag
     2041 gcagcaactc cctcagcaac agcagacata gtgctgagga aaggagccac catcaccacc
     2101 accacgaggc tccagactct tcccatggga aaaagactag agagagtgaa cgcaatcatc
     2161 ggaccactga ggcagagccc aagactcttg aagagccaaa acatgagacc aaaaagctaa
     2221 agactctgtc agagtatgca cagacactgc agctgggttg gaatgggctc ctagtgctga
     2281 aaaacagctg ctttccgact tctatgcaca tccttgaggg ggaccagggg gttatcagtg
     2341 gtctcctcaa agaccacact tctggcagca agctgaccca actaaagatt gcccagcgtc
     2401 ttcgcctgga tcagcccaaa ctggatgagg tcacccgtcg catcaagcag gggagcccta
     2461 acggctatgc tgtgctccta gccatccagt caacccccag cgggcctggc gctgagggga
     2521 tgcccatggt ggagccaggc ctgcagaggc ggcttctcag gaacctggtc tcctacttaa
     2581 aacagaagca ggctgcaggg gtgatcagct tgccggtggg tgggtctaag ggcagagaca
     2641 gcactggcat gctctatgcc ttcccgccct gcgacttctc acagcagtac ctccagtcag
     2701 cacttcggac attgggcaag ttagaggaag aacacatggt gatagtcata gtaagagacg
     2761 ccgcctagcc cacctggcct tccagctgtc tgtgtcacaa aagcaattat tctaaacacc
     2821 tgctctcctc tacctacctt accctggtct ggattctctg ctgggttttt gtggttcatt
     2881 tggtggcatc ctgttcactg ctaaaactaa gttcttagat ttggggagaa tttttgtttt
     2941 tataggaaga aactgttgtt ttccgtgtat gagattctgt ctgctgtatt ctgtattttt
     3001 ttatatttta ttttattttt ttgactaact gtatggaaaa ttgtcagtaa agcctttgtc
     3061 agagga
//
