LOCUS       NM_001408811            3189 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 12B (Rbm12b), mRNA.
ACCESSION   NM_001408811 XM_039110942
VERSION     NM_001408811.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jun 27, 2022 this sequence version replaced XM_039110942.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.251873.1,
                                           SRR26643293.26711.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                JAXUCZ010000005.1  30399246-30399332
            88-137              JAXUCZ010000005.1  30404041-30404090
            138-3189            JAXUCZ010000005.1  30404605-30407656
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..3189
                     /gene="Rbm12b"
                     /gene_synonym="RGD1307658"
                     /note="RNA binding motif protein 12B"
                     /db_xref="GeneID:313069"
                     /db_xref="RGD:1307658"
     exon            1..87
                     /gene="Rbm12b"
                     /gene_synonym="RGD1307658"
                     /inference="alignment:Splign:2.1.0"
     exon            88..137
                     /gene="Rbm12b"
                     /gene_synonym="RGD1307658"
                     /inference="alignment:Splign:2.1.0"
     exon            138..3189
                     /gene="Rbm12b"
                     /gene_synonym="RGD1307658"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..2697
                     /gene="Rbm12b"
                     /gene_synonym="RGD1307658"
                     /note="RNA-binding protein 12B-A"
                     /codon_start=1
                     /product="RNA-binding protein 12B"
                     /protein_id="NP_001395740.1"
                     /db_xref="GeneID:313069"
                     /db_xref="RGD:1307658"
                     /translation="MAVVIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGKAGEAF
                     IIFATDEDARRAISRSGGFIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRPGPEASG
                     VGNMYHFIDALKEEERYSGYGSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRG
                     LPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMG
                     SRFIEVMQGSEQQWIEFGGTASKGGDTLHKRSEEHSPSRRLNDRYFWKRSRSKSPRTR
                     SRSPLGFYVHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQK
                     DYNTALGLHKTVLQYRPVLIDPISRKEMVKIIECYEKKRPESLEEERPGRVSQKYSEE
                     GFPGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFK
                     SEEQAMKAERLNRQRFLGTEVLLRLISEEQMQEFGVNFSWMSNEKTQACSRSHDGDDC
                     SCLFDLKDPLATGQSFGQSESIRYQPKDFRKMGHFKHPRGYFQQSDRHSPEDFRHSPE
                     DFGHPREEHSRRSREEDWRRPLEDWKWPLEDDFRQSREKDCRQLPEKDFRCPWEEDFR
                     RPSQEHFRRSYQEHIRQPPHEHFRYSREEDSRHVADEDFRYPADEDFRTSQEDLRCPT
                     DEDFRQVCLEDHREVPEGDLRRSDKFRLPGEDFWTSSDFRGHHPFVNFGHLEGGKFDF
                     GKYNIGSFSEAKVTSDLNLSCRSGGIIPVKISNLPFKANSNEILDFFHGYKVIPGSVS
                     LQYNEQGLPIGEAIVAMTNYNEALAAVKDLSGRPVGPRKVKLSLL"
ORIGIN      
        1 tctccttttt tcccccggcc ttgttgggac ctagttggcc ttgtggatgc ggctgcaagg
       61 aagagcgtcc caatctccgt ttgtgggtta agttgctttt acagagtaag caggtctcca
      121 agaaataaaa ggaaaaggtg attattgctg tggcttgagc tcagcatggc tgtagtcatc
      181 cgtttacagg ggcttccttt tattgcgggt cctgtggaca tccgtcactt cttcaaggga
      241 ttgactattc ctgatggagg agtgcatgtg attggaggga aagctgggga ggcttttata
      301 atttttgcca cggatgaaga cgcaagacgt gccataagtc gctcaggagg gtttatcaag
      361 gattcgtctg tagagctttt tctgagtagc aaggtagaaa tgcagaagac catagacatg
      421 aaaagaagtg ctcgtgtagg aagagggcga ccaggacctg aggcctcagg ggttggcaac
      481 atgtatcatt ttatcgatgc tctgaaggaa gaggaacgtt attctggata tggctctgca
      541 gttaatccag atgctgggtt tcatataaat ggtacaggac ttgacttgag gccaagaaag
      601 accaggccac tgaaggctga gaatccttac ttgttccttc gaggtttgcc ttacttagta
      661 aatgaagatg atgtccgtgt ctttttctct ggtttgtgtg tagatggagt aattctctta
      721 aaacaccatg atgggcgaaa taatggcgat gctatagtaa aatttgcttc atgtgttgat
      781 gcttcaggag gtcttaaatg ccatagaagt ttcatgggtt ccagatttat agaagtcatg
      841 cagggttcag aacaacagtg gattgaattt ggtggtactg caagcaaggg cggtgacacc
      901 ctgcataaga gatctgaaga acattctcct tcaaggaggt taaatgacag gtacttttgg
      961 aaacggtctc gttcaaagtc tcccagaaca cgttctcgct ctcctcttgg attttatgtt
     1021 cacttaagaa atctgtcctt acatactaac aaaagagatc taaggtatct ctttagagat
     1081 actgacctga gtaacgacca gattaagttt ttatataaag atgatcgaag aacgcggtat
     1141 gcctttgtga tgttcaagaa tcaaaaagac tataacactg ccctgggttt gcataagact
     1201 gttttacaat atcgtccagt tcttatcgat ccaatttcta gaaaggaaat ggtgaaaatc
     1261 attgaatgct atgaaaagaa gagaccagag tctttggagg aagagaggcc aggacgtgtt
     1321 tcacaaaagt actctgaaga aggcttccct ggctctggtc agaagctgtg catatatata
     1381 agaaatttac catttgatgt tacaaaaggt gaagtgcaga agttctttgc agacttttct
     1441 cttgttgagg atgacattta tttgctttct gatgacaagg gaattggttt gggagaagca
     1501 ctggtgagat ttaaatcgga agagcaggcc atgaaagctg aacgtttgaa ccggcagaga
     1561 ttcttgggga cagaggtgtt gttaagactt atatctgagg aacaaatgca ggagtttggt
     1621 gtaaattttt cctggatgtc aaatgagaag acacaagcct gctcccggtc acatgatgga
     1681 gatgactgtt cctgtctgtt tgacttaaaa gatccactgg caacaggcca gtcctttggc
     1741 cagtctgaaa gcattcgtta tcagccaaaa gacttcagga aaatgggtca tttcaagcat
     1801 ccccgagggt atttccagca gtctgacagg cactctcctg aggacttcag gcactctcct
     1861 gaagactttg gacaccccag ggaggaacat agcaggcgct ctagggagga agactggaga
     1921 cggccccttg aggattggaa atggccactg gaagatgatt ttaggcagtc tcgtgaaaaa
     1981 gattgtaggc agctaccaga gaaggatttc agatgccctt gggaagaaga cttccgacgg
     2041 ccatctcagg agcacttcag gcgttcatat caggagcaca ttagacagcc accccatgaa
     2101 catttcaggt attcccgaga ggaagattcc aggcatgtgg cagatgaaga ttttaggtac
     2161 cctgctgatg aggacttcag gacctcccaa gaagatttga gatgtcccac tgatgaggac
     2221 tttaggcagg tgtgtctgga agaccacagg gaagttcctg agggggatct tagacgttct
     2281 gataagttta gacttcctgg agaggatttt tggacctcat ctgatttcag aggtcaccat
     2341 ccttttgtga actttggtca cctagaaggt ggcaaatttg attttggaaa gtataacata
     2401 gggagttttt cagaggcaaa agttacatct gatttaaatt taagttgtag gtcaggtgga
     2461 ataattcctg taaaaatctc aaatcttcca ttcaaagcta attctaatga aattctagac
     2521 ttttttcatg gttataaagt catacctggt tctgtttcat tacagtacaa tgagcaagga
     2581 ttacctatag gagaagctat tgttgctatg acaaattata atgaagctct agctgctgtt
     2641 aaagatctaa gtggtagacc agttggtccc cgcaaggtta agctcagttt gctttagagg
     2701 gtctttttaa gtaaacagtt ttcttctact gtattggttc agtgaatgta tacttttgta
     2761 atttaattat ctaaaaaatg tttttaaagt gtgattagaa aaaaaaaggt gttatgcaaa
     2821 tccgggttcc tttttatttc aagtggacat gcatttaccc cctaatttaa aattacatat
     2881 actgtttttc gcaggtagaa tagaacaaat tttctgttct cattaatgct atgaataaat
     2941 taatctttga ctttgttttt actatctttt actcagacta tataaggaaa taaaggctga
     3001 gtgattaatc gggtttggta ctttttctaa ttgcctgtaa aactgcttgt caagatatca
     3061 tgctaatgtc tcttataaac tctaaatagt tcagaaaatg aacttactgt gaaagaaatt
     3121 tacttaagtt cttcaatatt tgtgttcaca agtttcaaaa gtttaataaa gataaaattg
     3181 caattgaaa
//
