LOCUS       NM_001409091            6764 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 12 (Rbm12), transcript
            variant 2, mRNA.
ACCESSION   NM_001409091
VERSION     NM_001409091.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6764)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 6764)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.968552.1,
                                           SRR26643299.16701.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN12840117
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JAXUCZ010000003.1  165089853-165089994 c
            143-224             JAXUCZ010000003.1  165081187-165081268 c
            225-6764            JAXUCZ010000003.1  165069744-165076283 c
FEATURES             Location/Qualifiers
     source          1..6764
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..6764
                     /gene="Rbm12"
                     /note="RNA binding motif protein 12"
                     /db_xref="GeneID:652928"
                     /db_xref="RGD:1594333"
     exon            1..142
                     /gene="Rbm12"
                     /inference="alignment:Splign:2.1.0"
     exon            143..224
                     /gene="Rbm12"
                     /inference="alignment:Splign:2.1.0"
     exon            225..6764
                     /gene="Rbm12"
                     /inference="alignment:Splign:2.1.0"
     CDS             247..3345
                     /gene="Rbm12"
                     /note="swan"
                     /codon_start=1
                     /product="RNA-binding protein 12"
                     /protein_id="NP_001396020.1"
                     /db_xref="GeneID:652928"
                     /db_xref="RGD:1594333"
                     /translation="MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAF
                     IVFATDEDARLGMMRTGGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANA
                     SRSGPPPSSGMSSRVNLPATVPSFNNPSPSVVTATTSVHESNKSIQTFSTASVGTAPP
                     SMGTSFGSPTFSSTIPSTASPMNTVPPPPIPPIPSMPSLPPLPSIPPIPVPPPVPTLP
                     PVPPVPPIPPVPSVPPMTTLPPISGMPPLNPPPVAPLPTGMNGSGAPISLNNNLNPVF
                     LGPLNPVNPIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHL
                     LKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK
                     QSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFF
                     KKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKK
                     GMLEKIDMIRKRLQNFSYDQREMVLNPEGEVSSAKVCAHITNIPFSITKMDVLQFLEG
                     IPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDM
                     REIEKNPPAQGKKGLKIPVPGNPAVPVIPSAGMPAAGIPSAGIPSAGIPSAGMPSAGM
                     PSAGLPAAGLPAAGLPGSGMPGSGMPGSGIPGPGIPGPGIPGPGIPGPGMPGPGIPGP
                     GIPGPGIPGAGIPGPPMPGPAMPGPSMPGPAMPGPAMPGPAMPGPAIPGPALPGPAIP
                     GPGIPSAGGEEHVFLTVGSKEANNGPPFNFPGNFGGPNAFGPPLPPPGLGGAFGDVRP
                     VMPSVGNSGLPGLGLEVPGFGGAPNNISGPSGFGGIPQNFGNGPGSLNAPPGFGNGPP
                     GLGSVPSHLSGPPAFGPGPGPGPIHIGGPPGFGASSGKPGPTIIKVQNMPFTVSIDEI
                     LDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV
                     LG"
ORIGIN      
        1 attttgtgaa gcggcagcgg aggtgttggc tgcagtgggc tccgggaaag ccgttcgggc
       61 tggggctgtc ggccgcaggg ctgaggcact cgcgcggggg gtaactcggg tctgggttct
      121 ggtgccgcgc aagctctccc cgtctaaaag ttggttttaa ttggttgccc acaggattga
      181 cttggcctct acttcttaag aaaatacatc tcttgtttta caaggtgtgt ttggtttcag
      241 cgcagcatgg ctgtggtcat ccgtttgcaa ggtctcccaa ttgtggcggg gaccatggac
      301 attcgccact tcttctctgg attgaccatc cccgatgggg gcgtgcatat tgtagggggt
      361 gaactgggtg aggctttcat cgtttttgcc actgatgaag atgcaaggct tggtatgatg
      421 cgcacaggtg gtacaattaa agggtcgaaa gtaacactgt tgttgagtag taaaacagaa
      481 atgcagaata tgattgaact gagtcgtagg cgttttgaaa ctgccaactt agatatacca
      541 ccagcaaatg ctagtagatc aggaccgcca cctagctcag ggatgagcag cagggtaaac
      601 ttgccagcaa cagtacccag ctttaataat ccttcgccaa gtgtagtaac tgctaccact
      661 tctgttcatg agagcaacaa aagcatacaa acgttttcca cagccagcgt aggaactgct
      721 cctccaagta tggggacttc ttttgggagt ccaacgttca gctcaaccat tccaagtaca
      781 gcttctccaa tgaacacagt cccaccacca ccaattcctc caatcccatc gatgccatct
      841 ttgccaccgc tgccatccat tcccccaata ccagttcctc ctccggtacc aacgttgcct
      901 cctgtgccac ctgttcctcc cattccccca gtcccttctg tgccacctat gaccacattg
      961 cctcccatat caggcatgcc acccttgaat ccaccacctg tggcacctct acctactgga
     1021 atgaatggct ctggagcacc tataagtctg aacaataatc tgaaccctgt gtttctgggt
     1081 ccattaaatc ctgttaaccc tatacagatg aactctcaaa gcagcgtgaa gtctcttccc
     1141 atcaaccctg atgatctata tgtgagtgtt catggaatgc ccttttctgc aatggaaaat
     1201 gatgtcagag agtttttcca tgggctccga gttgatgcag tgcatttgtt aaaagatcat
     1261 gtagggcgaa ataatgggaa tggattggtt aagtttctct cccctcaaga tacatttgaa
     1321 gctttgaaac ggaacagaat gctgatgatt caacgctatg tggaagtcag tcctgccaca
     1381 gagagacagt gggtagctgc tggaggtcat atcactttta agcaaagtat ggggccttct
     1441 ggacaagccc accctcctcc acagacactt ccaaggtcaa aatcgcccag tgggcagaaa
     1501 aggtcaagat caagatcacc tcatgaggct ggtttttgtg tttacttaaa agggctaccc
     1561 tttgaagcag aaaacaaaca tgtcattgat ttttttaaga agttggatat tgtggaagat
     1621 agtatttata tagcttatgg acccaatggg aaagcaactg gtgaaggctt tgtagagttc
     1681 aggaatgatg ctgactataa ggctgctctc tgtcgtcata aacagtacat gggcaatcgc
     1741 tttattcaag ttcatccaat aactaagaaa ggtatgctag aaaagataga tatgattcga
     1801 aaacgacttc agaacttcag ctatgaccag agggaaatgg tgttaaatcc ggagggggaa
     1861 gtcagttctg ccaaagtctg tgcccatata acaaacattc cattcagcat taccaagatg
     1921 gatgttcttc agttcctaga aggaatccca gtggatgaga atgctgtaca tgttcttgtt
     1981 gataacaatg ggcaaggtct agggcaagca ttggttcagt ttaaaactga agacgatgca
     2041 cataaatctg aacacttaca ccgtaaaaaa ctgaatggga gagaagcttt tgttcatata
     2101 gttaccctag aagatatgag agagattgag aaaaaccccc cagcccaagg gaaaaagggc
     2161 ttaaagatac ctgttccagg taatcctgca gtaccagtga tacccagtgc agggatgccc
     2221 gctgctggga tacccagtgc tgggataccc agtgcaggga tacccagtgc tggaatgcct
     2281 agtgctggaa tgcctagtgc agggttgcct gctgctgggt tgcctgctgc tgggttgcct
     2341 ggctctggaa tgcctggctc tggaatgcct ggctctggaa taccgggtcc cggaataccc
     2401 ggtcctggaa tacccggtcc cggaatacct ggtcctggaa tgcccggtcc tggaataccg
     2461 ggtcccggaa tacccggtcc cggaatacct ggtgccggaa tacctggtcc cccaatgcct
     2521 ggtcccgcaa tgcctggtcc ctcaatgcct ggtcccgcaa tgcctggtcc cgcaatgcct
     2581 ggtcccgcaa tgcctggacc agcaataccc ggtcccgcac tgcctggacc agcaatacct
     2641 ggtcctggca tccccagtgc aggaggagaa gagcatgtct tcttgactgt aggatcaaag
     2701 gaggccaata atgggccacc atttaacttc cctggtaatt ttggtgggcc caatgctttt
     2761 gggccaccac tcccccctcc aggattaggg ggcgcctttg gtgatgttag gcctgttatg
     2821 ccttcggttg gaaatagtgg tttgcctggc ctaggactgg aagttccagg ttttggaggt
     2881 gcaccaaata atataagtgg gccatcagga tttgggggga ttcctcagaa ctttggaaat
     2941 ggcccaggta gtttaaatgc tcctcctggt tttggaaatg gaccccctgg tcttggaagt
     3001 gttcctagtc atttaagtgg gcctccagcc tttgggcctg ggcctgggcc tgggccgatc
     3061 catattgggg gtccccctgg ctttggagcc agctctggaa aaccaggacc tacaataatt
     3121 aaggtgcaga acatgccttt tactgtatct attgatgaaa ttttagattt cttttatggt
     3181 tatcaagtaa ttccaggttc agtatgttta aaatacaatg aaaaaggtat gcctacaggt
     3241 gaagccatgg tggcctttga atctcgggat gaagccacag ctgctgtcat tgacttaaat
     3301 gataggccta taggttctag aaaggtaaaa ctcgttctag ggtagccgtt cacatcagtt
     3361 ctttattggg tatatctttc tttttatttt tgctgcgatt aatgcatcca gattgttttc
     3421 ctagtagtcc agttagaacc tgtgggttgt ttcaattgca gatagattgg tttctctaac
     3481 acagagcatt ggttggctgt ttacaactca cagaatacac attgcaattt gttacagtaa
     3541 agctgtctgg agagaacaca aaaacaattt tggcgtacag tagagaccgt ttgtaatact
     3601 cgatcatata aagcttatca aggaatctag attggttttc ttttatacca catgggatga
     3661 agaaaataga gacgtgagta gagctcgagg agggtgctcg tgccagtgct gacaagtaga
     3721 agttggccac ttttgcaatt tgatttaaag ttggacatgt ttgctttgtt atagggtcaa
     3781 agctttgtct gaaaccttta ttttctttta aaattgaata aagtctctgt atctggattc
     3841 attgtatgta cctttattgc ttctcgaggg ctcctgctgt acagacggtc ctgcttcagt
     3901 gttgccgctt acgtgcctaa ttgactcact tgtaataagt acaactgttt tgttagcttt
     3961 aaattaattt ctaatataaa aactccacac ttgtggtttg tgctaaataa ccctgaactt
     4021 tgatttctca tgtcacactt aggattgtgt gaaatgactt ttaccataaa taaacttcgg
     4081 agtcctctgc tgaccttatt gggtttgatc accaagtttt atttagttta gtaagttaaa
     4141 atttgttcat attgtttgga tgacaatgaa aatcagaaac catttagtaa tcagtgttta
     4201 ggtgtttgat ttgaacttta ctgtgatgga ctaatttagc aaatcgtttt tgtcccaatt
     4261 tatgtgaatt ttggaacaaa ggaattctag gaaagaacat tctatcttgg aatataaaac
     4321 tgaaattgaa agtggtagtt ttgttagcag tattgtagaa tgaaaaatcc ctccggtgga
     4381 tcataggctg acgtgtggtt aattctgttc atttggaggc ttttggagta gttgtttgat
     4441 catgagtctg ttcacaaaaa ttctttatgc cgagtctaag tgcagctgcc agaagagaga
     4501 attgaggtca ctctgtgcat tttcatagtc tttccttctg gcagtcagga cactcagatg
     4561 cgcaaatctc tggttggcta aatgtccttt cccttaaaag catttggttt atcacatctt
     4621 gttcactgac acttaaggct cttttttaaa tttaaaatgc ttgaaagcta tttcacattt
     4681 cacattaaca tacagaattg gaggttgatg aataataatg ggaagtaaat agtatctttc
     4741 acataatgta gctttggttt gaaacaccaa cattgagaag tctgcattta agcatttctc
     4801 acatacatta tatatatttt atatatatat atatatgtat gtatatatac atgtttctat
     4861 gcatgtatac acacatatac atatgcacac acaaatgtat gtatgtttct ctgtagtgcc
     4921 ttttttgtgt tctaagggag tggtacactg aagtgaagtt tcgtcgtgta attttagagt
     4981 taagagtggc aacagtctct tgtgtggaaa gtttggaaag cctgttcact actctagtct
     5041 tagaggagag agagtatggg ggttttgttc agggatagga ttgtgcagac tttgagaagt
     5101 ggctgcattg tgaatcactt gataactcac aaacataatt tacctgacag atagctactg
     5161 cctcaaaaag caatatgttt ttatgtgagg ttcagtttta gtaatcattt ctcgttccaa
     5221 agacagagta tacacacttc agaactattt ttgggcatct tatttcaact gcaggttatt
     5281 ttctccattg gaaactatct ttattttaga aaaaaaaaat gattgttgga aggtaaaaat
     5341 cttttatcct ttctcacaat ttattttggt tgtattttca tacatgctta ttaaatattt
     5401 catacactca attgcaacca ttgttatttc tacatcttag ataaatgctt taaaaaaaaa
     5461 aaaccctggt tctcactgtt cattaaataa agaaaaatag tgttggtgta gaaatcagag
     5521 agaattgtgt tctgcatttc ctttaatcac agcagagctt gtgggatgta attaaatgct
     5581 ctgccctctg gaatctgagc ttgtatgttt gaggcagacc caattcctaa gtatatattg
     5641 ttttatgttg tttgggcatt gaagtttcag gttttttgtt ttagtaacca tgaaaatgtg
     5701 ttctatcaaa ctattcatat ctcttagaca aattttctcc agaactagac ttggtataga
     5761 tttgaattta cataattttt tcatttgtat ggtatggagg ttttgtaaag ctttgctcaa
     5821 agtgtgtttg taaacactgt caaggtattc tcaacttcat gtgcaaattt tattgtctat
     5881 tttcggtgac tttgacattt atggaaaaga atattttatt taggtttaat ttgtttctcc
     5941 taagttttta ttagtgttta tttttctttt ggttttatag gattagagaa acctacaaat
     6001 gtattgtata aataagcaaa tttgtaaatt tttaaaactc cagtgccaga tttagctcat
     6061 aagcataact tggaggtgtt tctgtgtcta tgctagtctg gatgtacaat tactagtggc
     6121 tgtgtaggtt ttgttttaat gcaacagtgt taagtgaaat gtagttcctg acttgttatt
     6181 ttaagttgtc aaagcattga caattaaagc tgcattagga aatgtcaaac ttacagagag
     6241 taatgctcag tgtagctaag gtcagtcttg atctgcttga tgagaatcga ggagtgcgtg
     6301 cctatatgga agtaagcaag cacacatggt tctaggtgga aatgctcacc tgcacaaaca
     6361 taaggaaaca aaagcgaact caaactcctt tttgctcaat tctgtgattg atgaagtgta
     6421 taaaaataaa atgcactcag tttgaaagcg ctggaaaaat gagtgaagaa catgtacaat
     6481 gactcctagt tcgtgttttg gggacgttac tggtggtgat cactgagtac ttttcccact
     6541 cacacaattg ccatgtgtaa gttaatttac ctcggcggtt ttattggcag ttctgtagtc
     6601 caaaattttg aactcaagca cagccaaagg gctgttgaca gtgaccacag ctttgccagc
     6661 acatcctact ttggcattat ttagcaattt ttgtttataa agaagtcttg gatactgttc
     6721 aataaacttg tcacaaaata aaggctgatg ctctgctgct ctaa
//
