LOCUS       NM_001401847            1832 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 11 (Rbm11), mRNA.
ACCESSION   NM_001401847 XM_006247994
VERSION     NM_001401847.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Pedrotti,S., Busa,R., Compagnucci,C. and Sette,C.
  TITLE     The RNA recognition motif protein RBM11 is a novel tissue-specific
            splicing regulator
  JOURNAL   Nucleic Acids Res 40 (3), 1021-1032 (2012)
   PUBMED   21984414
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Feb 28, 2022 this sequence version replaced XM_006247994.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.68230.1,
                                           SRR26643298.65863.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JAXUCZ010000011.1  27721911-27722062
            153-315             JAXUCZ010000011.1  27725769-27725931
            316-388             JAXUCZ010000011.1  27727163-27727235
            389-485             JAXUCZ010000011.1  27727756-27727852
            486-1832            JAXUCZ010000011.1  27729774-27731120
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11p11"
     gene            1..1832
                     /gene="Rbm11"
                     /note="RNA binding motif protein 11"
                     /db_xref="GeneID:288321"
                     /db_xref="RGD:1305195"
     exon            1..152
                     /gene="Rbm11"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..773
                     /gene="Rbm11"
                     /codon_start=1
                     /product="splicing regulator RBM11"
                     /protein_id="NP_001388776.1"
                     /db_xref="GeneID:288321"
                     /db_xref="RGD:1305195"
                     /translation="MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKD
                     RDGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESC
                     AKINSHSFRNDEMVCRPSFPVPFFPITSAALPQEYFFFQKMQWYTHSPALQPPFYEMT
                     APLPNPASDSCSLNHAPDLEAGPSSYEWTHQPPNDPDLYPRIKRKRQRPDSDSDSSSG
                     DKRGNEGSQKCHKCKKKKRY"
     exon            153..315
                     /gene="Rbm11"
                     /inference="alignment:Splign:2.1.0"
     exon            316..388
                     /gene="Rbm11"
                     /inference="alignment:Splign:2.1.0"
     exon            389..485
                     /gene="Rbm11"
                     /inference="alignment:Splign:2.1.0"
     exon            486..1832
                     /gene="Rbm11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagcgaggg ggcggggcct cggcacctcc tccatccctc gctgcggacc gcagggatgt
       61 tccccgctca ggaggaggct gacaggaccg tgtttgtggg caatttagag gcccgtgtgc
      121 gggaagagat tctttacgag ctgttccttc aggctgggcc actaaccaaa gtgactcttt
      181 gcaaagacag agacgggaaa ccaaagtcct ttggctttgt ctgcttcaag catccggaat
      241 ccgtgtctta cgccatagct ttgctgaatg gaattcgttt gtatgggaga ccaattaatg
      301 tgcagtatcg gtttgggagt tctcgctctt ctgaaccagc taaccaaagt tttgagagct
      361 gtgctaagat caactcacac agcttcagga acgatgaaat ggtgtgcagg ccttccttcc
      421 ccgtgccgtt tttccccatt acgagtgctg cgttacctca agagtatttt ttctttcaaa
      481 aaatgcagtg gtacacacac agcccagcgc tgcagcctcc tttctacgag atgacagctc
      541 cacttcccaa ccctgcgtct gactcttgct ccctaaacca cgctccagac ctagaggctg
      601 gccccagctc ctacgaatgg actcaccagc caccgaatga ccctgacctg tatcctagga
      661 ttaaacgaaa gaggcaaagg ccagacagcg acagcgacag tagctcagga gacaagagag
      721 gaaatgaagg tagccaaaag tgccacaagt gtaaaaagaa gaaacgctac tagcgaaccg
      781 tgtctgcact gctctcgaac cttcaagcaa agaagaatct gtcgcacacc aaatgaccaa
      841 tctttggccc ggcgtgtcac ttttgaaacg tatggaaata tgactctgcg atttgctatt
      901 cggtttgcta ttcgcgccca tgaatgataa aagcctttaa acaataatat accatactgc
      961 tttcctgttt gcaaggttac ctttggaccg ttgtcagtgc cctttgccca gtcttatttt
     1021 agtgttgcgg atgaaatttc actaaattca aaagccactc atgaagtcct tgagggttaa
     1081 gcttcctgct ctccccagag tctcactgaa ggctttcaag cacaggtggg ctggcctcag
     1141 agggacctct gtaggtcgct ggcaggacta atgggaataa ttaaaaaaag agtgtgttct
     1201 agtaaatatg tagcgaggag gcttgagttc cctttgtcac cgacactttg ggttttgtct
     1261 aagtatgaga ggtctgagct tcactatcag ggttgattca tatgaccatg actgtggcac
     1321 caacggaaag ataaccgaca taagctcggt gtcatatgca taaaggcaac gctatgtgat
     1381 tatttccctt ttctgtgttt ttggttgata taattatctg tacacaccac acttcttgtt
     1441 tgatggtatc agtatctact ctctagttct ccccacaggg gcagaaagga cataatgact
     1501 gtgtgattgt cgcaatgagt aagtacatag gatgatgctg taccaccgtg tacttaatgc
     1561 ctgtggtcca agtctatact tttaattctc ttattctagt aggtaaatgt atatgaatgg
     1621 tgtgtgtcaa cacttttgct catctaatag cttaccataa actaaaatga tgacgactat
     1681 atacttatta aagctaattg aaaggatcgc gcaaactcat tatgaattat ctgctcagtt
     1741 cagtggggaa taaggcccac gtgggtgtga cttctgcatg tcgcctactc ttccacacat
     1801 tatttattta atgaataaaa tatctttaac ca
//
