LOCUS       NM_001398654            1507 bp    mRNA    linear   ROD 18-NOV-2024
DEFINITION  Rattus norvegicus ribosome binding factor A (Rbfa), mRNA; nuclear
            gene for mitochondrial product.
ACCESSION   NM_001398654 XM_006254951
VERSION     NM_001398654.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Dec 21, 2021 this sequence version replaced XM_006254951.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.158482.1,
                                           SRR26643291.41044.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840110,
                                           SAMN12840111 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-272               JAXUCZ010000018.1  75923622-75923893   c
            273-492             JAXUCZ010000018.1  75920789-75921008   c
            493-605             JAXUCZ010000018.1  75920172-75920284   c
            606-690             JAXUCZ010000018.1  75917421-75917505   c
            691-758             JAXUCZ010000018.1  75915368-75915435   c
            759-1507            JAXUCZ010000018.1  75914247-75914995   c
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.3"
     gene            1..1507
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /note="ribosome binding factor A"
                     /db_xref="GeneID:307235"
                     /db_xref="RGD:1311910"
     exon            1..272
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..1146
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /codon_start=1
                     /product="putative ribosome-binding factor A,
                     mitochondrial"
                     /protein_id="NP_001385583.1"
                     /db_xref="GeneID:307235"
                     /db_xref="RGD:1311910"
                     /translation="MWASVAGLRGSCAGLQALRGSYRAALLPSSSLALHTSVTSCGSK
                     NLLKKFASKTRKKFWYEAPSLGSHLTHKPSKYEFLTKNTLKKTRKEDTIRLRVLNGLL
                     HKSLTELLCTPEVSQEVYDLNVELSKVSVTPDFSACRVYWKTGVSAEQNRHTEAVLQR
                     SATYMRHLLISQQTLRNVPPIVFVQDKRDIVLAEVDRLLAVADFGPPDERDDLDGLRS
                     PDAQAPHDSPEPTTHPNLCGIDHEALNKQIMEYKRKKERGLQCVSLAPPSGQEQAPDP
                     AHLLRKRKKARSRQHQDASPRSFLLGEEDEDEDSSTEWECHAQEAEDEWEAEGGGEGV
                     QQGLGGKREQG"
     exon            273..492
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
     exon            493..605
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
     exon            606..690
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
     exon            691..758
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
     exon            759..1507
                     /gene="Rbfa"
                     /gene_synonym="RGD1311910"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacatggcc ggggcttcct gctgccgggt ctcgtctttg gtcatctagg gcttactctc
       61 ccgtctgtcc agtgcataat cgagcttgcg ggccccgcgc tcccaggcat gtgggccagc
      121 gtcgcggggc tgagaggctc ctgcgcgggg ctgcaggctc tgcggggcag ctacagggcc
      181 gcgcttcttc ccagcagctc gctggccctg cacacctcgg tcacctcctg cggaagcaag
      241 aacttgctca agaaatttgc ttcgaaaacc agaaagaagt tttggtatga agctccatcc
      301 ctggggtctc acttgactca caagccatcc aagtatgagt tcctcacgaa gaacacgtta
      361 aagaagacta ggaaggagga cactatacgc ctaagggtcc tgaacggcct tctccacaag
      421 tcattgacag agctgctgtg cactcctgaa gtgagccaag aggtgtatga cctgaatgtc
      481 gagctctcca aggtctctgt gactccagac ttctcagcct gccgagtgta ctggaagaca
      541 ggtgtctctg cagagcagaa caggcacacg gaggccgtcc tgcagaggag cgctacctac
      601 atgaggcatc ttctgatatc tcagcaaacc ctgagaaatg ttccacccat agtgtttgtt
      661 caagacaaga gagacatagt cctggctgag gtagatcggt tactggctgt ggctgacttt
      721 ggacccccag atgaaaggga tgacttggat ggtttgagga gccccgatgc ccaggcacca
      781 catgactccc cagaaccaac cacacaccca aatctgtgtg ggattgacca cgaggcactg
      841 aataagcaaa taatggagta caaacgcaag aaggagcgag ggctccagtg tgtgagcctg
      901 gcgccaccat cagggcagga gcaggcgcct gatcccgctc atttgctccg aaagagaaag
      961 aaggcccgat cccgccagca ccaggatgct tcccccagaa gcttcctttt gggtgaggag
     1021 gatgaggatg aggacagcag cacagagtgg gaatgccacg cccaggaggc tgaggacgag
     1081 tgggaagcag agggtggagg tgagggcgtc cagcaggggc tcggtggcaa aagagagcag
     1141 gggtaagggg tggggcctca gagctgcccg cccctgccag tgggtcagac tggggacaga
     1201 gcctttgagc agaggggaga gtttacttcc gggtcaggag atggaggcgg agctcctggt
     1261 gcaggccgtc ctgctgtttg tcagtcatct ttccagccgt cggtacaccc catcacctgt
     1321 ctggactcac tggttttcct ccagcgttca tgcataacta aaacggaatc tcgtcacgga
     1381 gtgactctca gtcactcaca gaggctgagc acagacccca taggactgca tctgcagatc
     1441 tccacagtga agaccctggt tcctgatgac ttctcttcaa ataaactatt ttctctttac
     1501 tcttgga
//
