LOCUS       NM_031816               1922 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RB binding protein 7, chromatin remodeling factor
            (Rbbp7), mRNA.
ACCESSION   NM_031816
VERSION     NM_031816.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ragazzini,R., Perez-Palacios,R., Baymaz,I.H., Diop,S., Ancelin,K.,
            Zielinski,D., Michaud,A., Givelet,M., Borsos,M., Aflaki,S.,
            Legoix,P., Jansen,P.W.T.C., Servant,N., Torres-Padilla,M.E.,
            Bourc'his,D., Fouchet,P., Vermeulen,M. and Margueron,R.
  TITLE     EZHIP constrains Polycomb Repressive Complex 2 activity in germ
            cells
  JOURNAL   Nat Commun 10 (1), 3858 (2019)
   PUBMED   31451685
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Basta,J. and Rauchman,M.
  TITLE     The nucleosome remodeling and deacetylase complex in development
            and disease
  JOURNAL   Transl Res 165 (1), 36-47 (2015)
   PUBMED   24880148
  REMARK    Review article
REFERENCE   3  (bases 1 to 1922)
  AUTHORS   Yamada,T., Yang,Y., Hemberg,M., Yoshida,T., Cho,H.Y., Murphy,J.P.,
            Fioravante,D., Regehr,W.G., Gygi,S.P., Georgopoulos,K. and Bonni,A.
  TITLE     Promoter decommissioning by the NuRD chromatin remodeling complex
            triggers synaptic connectivity in the mammalian brain
  JOURNAL   Neuron 83 (1), 122-134 (2014)
   PUBMED   24991957
  REMARK    GeneRIF: Endogenous Mta1/2 forms a complex with chromodomain
            helicase (Chd)4, histone deacetylase (Hdac)1/2, RbAp46/48, and Mbd3
            in the rat cerebellum
REFERENCE   4  (bases 1 to 1922)
  AUTHORS   Herz,H.M., Garruss,A. and Shilatifard,A.
  TITLE     SET for life: biochemical activities and biological functions of
            SET domain-containing proteins
  JOURNAL   Trends Biochem Sci 38 (12), 621-639 (2013)
   PUBMED   24148750
  REMARK    Review article
REFERENCE   5  (bases 1 to 1922)
  AUTHORS   Simon,J.A. and Kingston,R.E.
  TITLE     Occupying chromatin: Polycomb mechanisms for getting to genomic
            targets, stopping transcriptional traffic, and staying put
  JOURNAL   Mol Cell 49 (5), 808-824 (2013)
   PUBMED   23473600
  REMARK    Review article
REFERENCE   6  (bases 1 to 1922)
  AUTHORS   Zoltewicz,J.S., Stewart,N.J., Leung,R. and Peterson,A.S.
  TITLE     Atrophin 2 recruits histone deacetylase and is required for the
            function of multiple signaling centers during mouse embryogenesis
  JOURNAL   Development 131 (1), 3-14 (2004)
   PUBMED   14645126
REFERENCE   7  (bases 1 to 1922)
  AUTHORS   Yang,J., Kiefer,S. and Rauchman,M.
  TITLE     Characterization of the gene encoding mouse retinoblastoma binding
            protein-7, a component of chromatin-remodeling complexes
  JOURNAL   Genomics 80 (4), 407-415 (2002)
   PUBMED   12376095
REFERENCE   8  (bases 1 to 1922)
  AUTHORS   Ginger,M.R., Gonzalez-Rimbau,M.F., Gay,J.P. and Rosen,J.M.
  TITLE     Persistent changes in gene expression induced by estrogen and
            progesterone in the rat mammary gland
  JOURNAL   Mol Endocrinol 15 (11), 1993-2009 (2001)
   PUBMED   11682629
REFERENCE   9  (bases 1 to 1922)
  AUTHORS   Guan,L.S., Rauchman,M. and Wang,Z.Y.
  TITLE     Induction of Rb-associated protein (RbAp46) by Wilms' tumor
            suppressor WT1 mediates growth inhibition
  JOURNAL   J Biol Chem 273 (42), 27047-27050 (1998)
   PUBMED   9765217
REFERENCE   10 (bases 1 to 1922)
  AUTHORS   Qian,Y.W. and Lee,E.Y.
  TITLE     Dual retinoblastoma-binding proteins with properties related to a
            negative regulator of ras in yeast
  JOURNAL   J Biol Chem 270 (43), 25507-25513 (1995)
   PUBMED   7503932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Nov 26, 2020 this sequence version replaced NM_031816.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF090306.1, BC062012.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-290               JAXUCZ010000021.1  35562741-35563030   c
            291-435             JAXUCZ010000021.1  35561726-35561870   c
            436-581             JAXUCZ010000021.1  35553286-35553431   c
            582-755             JAXUCZ010000021.1  35552552-35552725   c
            756-871             JAXUCZ010000021.1  35551330-35551445   c
            872-1032            JAXUCZ010000021.1  35550325-35550485   c
            1033-1159           JAXUCZ010000021.1  35549508-35549634   c
            1160-1237           JAXUCZ010000021.1  35549329-35549406   c
            1238-1314           JAXUCZ010000021.1  35548208-35548284   c
            1315-1372           JAXUCZ010000021.1  35547035-35547092   c
            1373-1483           JAXUCZ010000021.1  35545827-35545937   c
            1484-1922           JAXUCZ010000021.1  35544873-35545311   c
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..1922
                     /gene="Rbbp7"
                     /note="RB binding protein 7, chromatin remodeling factor"
                     /db_xref="GeneID:83712"
                     /db_xref="RGD:620125"
     exon            1..290
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..1552
                     /gene="Rbbp7"
                     /note="RBBP-7; retinoblastoma-binding protein 7;
                     nucleosome-remodeling factor subunit RBAP46"
                     /codon_start=1
                     /product="histone-binding protein RBBP7"
                     /protein_id="NP_114004.1"
                     /db_xref="GeneID:83712"
                     /db_xref="RGD:620125"
                     /translation="MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSL
                     TVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKG
                     EFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKP
                     DPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDA
                     KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN
                     CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS
                     SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV
                     SEDNIMQIWQMAENIYNDEESDVTTSELEGQGS"
     exon            291..435
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            436..581
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            582..755
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            756..871
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1032
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1159
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1160..1237
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1314
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1372
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1483
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1922
                     /gene="Rbbp7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctgagag gcgcgggttg aaaagtctcg ttccaagttt ggagagaggg agagagagga
       61 gagcgtctca gacctcgcta cccgcaagcg gggaggaggc agaagagaag atcgcggcgt
      121 ctggggagca cccagacagc cagaccgagc tcaggctttc cgagctagga gtgcgtgacg
      181 tgcctgggag aggcaggagc gcctgcgatc gggctgctct tgactagcga gagaagtccg
      241 aggcggcaaa ggggggcgaa cgacccgacg caagatggcg agtaaagaga tgtttgaaga
      301 tactgtggag gagcgtgtca tcaacgaaga atataaaatc tggaagaaga atacaccgtt
      361 tctgtatgac ctggttatga cccatgctct tcagtggccc agtcttaccg ttcagtggct
      421 tcctgaagtg actaaaccag aaggaaagga ttatgccctt cattggctag tgctgggtac
      481 ccatacatct gatgagcaga atcatctggt ggttgctcga gttcatattc ccaatgatga
      541 tgcacagttt gatgcttccc attgtgacag tgacaaggga gaatttggtg gctttggttc
      601 tgtaacagga aaaattgaat gtgaaattaa aattaatcat gaaggagaag taaatcgcgc
      661 tcgttatatg ccacagaacc cacacatcat tgccacaaaa acaccatctt ctgatgtttt
      721 ggtttttgac tatacaaaac accctgcaaa accagatcca agtggagagt gtaatcctga
      781 tcttagatta agaggtcacc aaaaggaagg ctatggtctc tcctggaatt ctaatttgag
      841 tggacatctc ctgagtgcat ctgatgacca tactgtctgc ctctgggata taaatgcagg
      901 accaaaggaa ggcaaaattg tggatgctaa agcaatcttt actggccact cagctgttgt
      961 agaggatgtg gcctggcatc tgctgcatga gtccttgttt ggatctgttg ctgatgatca
     1021 gaaacttatg atatgggaca ccagatccaa tactacttct aagcccagcc atttggtgga
     1081 tgcacacact gcggaggtca actgcctctc attcaatccc tacagcgagt ttattctggc
     1141 aactggctct gcagataaga ctgtagcttt atgggacctg cgtaatctga aactaaaact
     1201 ccacaccttt gaatcccata aggatgaaat ttttcaggtc cactggtctc cacataatga
     1261 aactattctg gcttcaagtg gtactgatcg ccgcctgaat gtgtgggatt taagtaaaat
     1321 tggagaagaa caatcagcag aagatgcaga ggatgggcct ccagagctcc tgtttattca
     1381 tggaggacac actgccaaga tttctgactt cagttggaac cccaatgaac cttgggtcat
     1441 ttgctctgtg tctgaagata acatcatgca gatatggcaa atggctgaaa atatttacaa
     1501 tgatgaagag tcagatgtca cgacatcgga actggagggg caaggatctt aaacccaaag
     1561 tatgagttgt ttctattgaa tgtattgcta cacgaatgct tgatttgtca agcgccaaaa
     1621 aggcattgta tagtaggaaa tgtaagtggg atggcttctg gcattcttta ccctctgatt
     1681 ctagcacttt caagtgagct gttgcgtact gtatcatatt gtagctatta ggggaacaaa
     1741 aaggaatgtt gcttaagaat ggacatcatt gttttaaaca cacattgctg ggtattgcct
     1801 ttgattcaac tgtcattttc tcaaactttt aagtgcttgc tcaagttccc aaatatgcga
     1861 ggataacttt tacacttttt ccttccaaca cttcttgatt ggctttgcag aaataaagtt
     1921 tt
//
