LOCUS       NM_001107912            1924 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus RB binding protein 4, chromatin remodeling factor
            (Rbbp4), mRNA.
ACCESSION   NM_001107912 XM_001061087
VERSION     NM_001107912.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ragazzini R, Perez-Palacios R, Baymaz IH, Diop S, Ancelin K,
            Zielinski D, Michaud A, Givelet M, Borsos M, Aflaki S, Legoix P,
            Jansen PWTC, Servant N, Torres-Padilla ME, Bourc'his D, Fouchet P,
            Vermeulen M and Margueron R.
  TITLE     EZHIP constrains Polycomb Repressive Complex 2 activity in germ
            cells
  JOURNAL   Nat Commun 10 (1), 3858 (2019)
   PUBMED   31451685
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Muralidharan B, Khatri Z, Maheshwari U, Gupta R, Roy B, Pradhan SJ,
            Karmodiya K, Padmanabhan H, Shetty AS, Balaji C, Kolthur-Seetharam
            U, Macklis JD, Galande S and Tole S.
  TITLE     LHX2 Interacts with the NuRD Complex and Regulates Cortical Neuron
            Subtype Determinants Fezf2 and Sox11
  JOURNAL   J Neurosci 37 (1), 194-203 (2017)
   PUBMED   28053041
REFERENCE   3  (bases 1 to 1924)
  AUTHORS   Basta J and Rauchman M.
  TITLE     The nucleosome remodeling and deacetylase complex in development
            and disease
  JOURNAL   Transl Res 165 (1), 36-47 (2015)
   PUBMED   24880148
  REMARK    Review article
REFERENCE   4  (bases 1 to 1924)
  AUTHORS   Herz HM, Garruss A and Shilatifard A.
  TITLE     SET for life: biochemical activities and biological functions of
            SET domain-containing proteins
  JOURNAL   Trends Biochem Sci 38 (12), 621-639 (2013)
   PUBMED   24148750
  REMARK    Review article
REFERENCE   5  (bases 1 to 1924)
  AUTHORS   Simon JA and Kingston RE.
  TITLE     Occupying chromatin: Polycomb mechanisms for getting to genomic
            targets, stopping transcriptional traffic, and staying put
  JOURNAL   Mol Cell 49 (5), 808-824 (2013)
   PUBMED   23473600
  REMARK    Review article
REFERENCE   6  (bases 1 to 1924)
  AUTHORS   Beyea JA, Olson DM and Harvey S.
  TITLE     Growth hormone (GH) action in the developing lung: changes in lung
            proteins after adenoviral GH overexpression
  JOURNAL   Dev Dyn 234 (2), 404-412 (2005)
   PUBMED   16127721
REFERENCE   7  (bases 1 to 1924)
  AUTHORS   Tagami H, Ray-Gallet D, Almouzni G and Nakatani Y.
  TITLE     Histone H3.1 and H3.3 complexes mediate nucleosome assembly
            pathways dependent or independent of DNA synthesis
  JOURNAL   Cell 116 (1), 51-61 (2004)
   PUBMED   14718166
REFERENCE   8  (bases 1 to 1924)
  AUTHORS   Zoltewicz JS, Stewart NJ, Leung R and Peterson AS.
  TITLE     Atrophin 2 recruits histone deacetylase and is required for the
            function of multiple signaling centers during mouse embryogenesis
  JOURNAL   Development 131 (1), 3-14 (2004)
   PUBMED   14645126
REFERENCE   9  (bases 1 to 1924)
  AUTHORS   Barak O, Lazzaro MA, Lane WS, Speicher DW, Picketts DJ and
            Shiekhattar R.
  TITLE     Isolation of human NURF: a regulator of Engrailed gene expression
  JOURNAL   EMBO J 22 (22), 6089-6100 (2003)
   PUBMED   14609955
REFERENCE   10 (bases 1 to 1924)
  AUTHORS   Verreault A, Kaufman PD, Kobayashi R and Stillman B.
  TITLE     Nucleosome assembly by a complex of CAF-1 and acetylated histones
            H3/H4
  JOURNAL   Cell 87 (1), 95-104 (1996)
   PUBMED   8858152
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168994.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001107912.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168994.1, SRR8487226.126796.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1924
                     /gene="Rbbp4"
                     /note="RB binding protein 4, chromatin remodeling factor"
                     /db_xref="GeneID:313048"
                     /db_xref="RGD:1593768"
     exon            1..23
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1285
                     /gene="Rbbp4"
                     /note="retinoblastoma binding protein 4;
                     retinoblastoma-binding protein 4 pseudogene"
                     /codon_start=1
                     /product="histone-binding protein RBBP4"
                     /protein_id="NP_001101382.1"
                     /db_xref="GeneID:313048"
                     /db_xref="RGD:1593768"
                     /translation="MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPS
                     LTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEK
                     GEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSK
                     PDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD
                     AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEV
                     NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA
                     SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS
                     VSEDNIMQVWQMAENIYNDEDPEGSVDPEGQGS"
     exon            24..171
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            172..317
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            318..491
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            492..607
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            608..768
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            769..895
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            896..973
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1050
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1108
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1219
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1881
                     /gene="Rbbp4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgccgccatg gctgacaagg aagcggcctt tgacgacgcg gtggaagaac gtgtgatcaa
       61 cgaggagtac aagatatgga agaagaacac cccatttctt tatgatttgg tgatgaccca
      121 tgccctggag tggcccagcc taactgccca gtggcttcca gatgtgacca ggcctgaagg
      181 gaaagatttc agcattcatc ggcttgtcct gggaacacac acatcagatg aacaaaacca
      241 ccttgtgata gccagtgtcc agctccctaa tgacgatgct cagtttgatg catcccatta
      301 tgacagtgaa aaaggagaat ttggaggttt tggttctgtc agtgggaaaa ttgaaataga
      361 aatcaagatc aaccatgaag gagaagtaaa cagggccagg tacatgcctc agaacccttg
      421 catcattgca acgaagactc catccagtga tgttcttgtt tttgactaca caaagcaccc
      481 ttctaaacca gacccttctg gagaatgcaa cccagacttg cgtctccgtg ggcatcagaa
      541 ggaaggttat gggctttctt ggaatccaaa tctcagcggg cacttactta gtgcttcaga
      601 tgaccatacc atctgcctgt gggacatcag tgcagttccc aaagaaggaa aagtggtgga
      661 tgcaaagacc atctttacag ggcatacagc agtagtggag gacgtttcct ggcatctgct
      721 ccatgagtct ctgttcgggt cagttgctga tgaccagaaa ctcatgattt gggatactcg
      781 ttcaaacaat acttccaagc caagccactc ggttgatgct cacacagctg aagtgaattg
      841 cttatctttc aatccttata gtgagttcat tcttgccacg ggatcagctg acaagactgt
      901 tgccttgtgg gatctgagaa atctgaaact caagttgcat tcctttgaat cacataagga
      961 tgaaatattc caagttcaat ggtcacctca caatgagact atcttagctt ccagtggcac
     1021 tgatcgtcgg ctgaatgtct gggatctaag taaaattgga gaagaacagt ccccagaaga
     1081 tgcagaggat ggcccaccag agttgttgtt tattcatggt ggtcacactg ccaagatatc
     1141 tgacttctcc tggaatccca atgaaccttg ggtaatttgt tctgtatcag aagacaatat
     1201 catgcaagtg tggcagatgg cagagaacat ttataatgat gaagaccctg aaggaagtgt
     1261 ggatccagaa ggacaaggat cctagatatg tctgcacttg tgattttaga ctctccttgt
     1321 tttcctctga agcctgagat ggatttaaca ttggtttggg acacagactt tgttcagctg
     1381 tccaacttca ataggtccca ccaacaatgc tattagccca aaccatgggt gttttctaaa
     1441 tcttaactgg ggggcttaat tcagcaaagc ctccattggt ggcttcagtt gtggctggat
     1501 agctgaacag agtctgtttt ttgttgtgtg tggtttttac ttcttttttt ttttttttct
     1561 ttctttcttt tttttttttt tttttttaat ctttttttct tttttaaact tgggaccacc
     1621 aagttgtaaa gatgtacgtt tttacctggc agttgtacca ctggtgcact gtcatgttga
     1681 gaaagagtgg attgctagtt tgtatttgtt tctaagatta aattaatcct tgataaacgt
     1741 tgcttttgta gggttagtct ttgaccacta tagtttgacg ccatctccat tttggctaac
     1801 ctgtctcacc atcaggccta ttaactctcc atgactaact gtgtaagtgc ttataacgga
     1861 ataaattgct tttctatata gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1921 aaaa
//
