LOCUS       NM_001191664            2924 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RB-associated KRAB zinc finger (Rbak), mRNA.
ACCESSION   NM_001191664 XM_221920
VERSION     NM_001191664.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2924)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            [WARNING] On Mar 13, 2025 this sequence was replaced by
            NM_001191664.2.
            
            On Jul 17, 2010 this sequence version replaced XM_221920.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1011079.1,
                                           SRR26360176.282926.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                JAXUCZ010000012.1  16490313-16490327
            16-142              JAXUCZ010000012.1  16498303-16498429
            143-238             JAXUCZ010000012.1  16498756-16498851
            239-2924            JAXUCZ010000012.1  16499835-16502520
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..2924
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /note="RB-associated KRAB zinc finger"
                     /db_xref="GeneID:288489"
                     /db_xref="RGD:1562875"
     CDS             1..2136
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /note="RB-associated KRAB repressor"
                     /codon_start=1
                     /product="RB-associated KRAB zinc finger protein"
                     /protein_id="NP_001178593.1"
                     /db_xref="GeneID:288489"
                     /db_xref="RGD:1562875"
                     /translation="MSISKGPLSFKDVAVAFSQEEWQQLDSEERTTYRDVMLETYSNL
                     VSVGYDVTKPNVIIKLEQGEEPWTVEGDRHAKRHLEIKKVDDPREGIQENGEKHLQCG
                     DDLHSWRAEKGDEFDEACTLEPPLISPSSGAHSCVSCGKTLESVTELICSDGSYAVEK
                     PDKCFECGKGYRENPEDLNQSEGNSSERDESILQKITILEKPFDYECLEALDRESVFM
                     AHERAYMGEKPYEWNGSGPDFIQISDFSTYHRSQVEMKPFECTQCGKSFCKKSKFIIH
                     QRAHTGEKPYACGVCGKSFSQKGTLTVHRRSHLEEKPYKCDECGKTFCQKLHLTQHQR
                     THSGEKPYECSECGKTFCQKTHLTLHQRNHSGERPYPCSECGKSFSRKSALNDHQRTH
                     TGEKLYTCNECGKSYYRKSTLITHQRTHTGEKPYQCSECGKFFSRVSYLTIHYRSHLE
                     EKPYECTECGKTFNLNSAFTRHRKAHAEERVQECGECGKPSRLQYLPDHADGLGEKHH
                     GCNECGKTFLENSAFSRHQPVPEGEKTYECNICGKVFSDLSCYTVHYRGHSEEKPFGC
                     SECGKTFSHNSSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSK
                     CGKVFSRMSNLTVHYRSHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECG
                     KKFHHRSAFNSHQRIHKRGTINVLNVENL"
     exon            1..15
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /inference="alignment:Splign:2.1.0"
     exon            16..142
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /inference="alignment:Splign:2.1.0"
     exon            143..238
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /inference="alignment:Splign:2.1.0"
     exon            239..2924
                     /gene="Rbak"
                     /gene_synonym="RGD1562875"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgagcatat caaagggccc actgtcattc aaggatgtgg ctgtggcctt ctcccaggag
       61 gagtggcagc agctggactc tgaggagagg acgacctacc gggatgtgat gctggagacc
      121 tacagcaacc tcgtctccgt ggggtatgat gtcaccaagc caaacgtgat tattaagttg
      181 gaacagggag aagaaccctg gacagtggaa ggtgaccgcc atgctaagag gcatttggaa
      241 atcaaaaaag ttgatgaccc cagagaagga atccaggaaa atggcgagaa acatctgcag
      301 tgcggtgatg atctccacag ctggagagcg gagaaggggg acgagtttga tgaagcctgc
      361 accctagaac cacccctcat ttcccccagc tcaggcgctc acagctgtgt ctcctgtggg
      421 aagactttgg aatctgttac agaactgatt tgcagtgatg gaagctatgc agtagagaag
      481 cccgacaagt gttttgagtg tgggaaaggg tacagagaaa accctgagga ccttaaccaa
      541 agtgagggta actcttctga acgtgacgaa agtattctgc agaaaatcac cattttggag
      601 aaaccctttg actatgagtg cttggaagcc ttagacaggg aaagtgtttt catggctcat
      661 gagagagctt acatggggga gaagccctat gaatggaacg gttctggacc agacttcatc
      721 cagatatcag acttcagtac gtatcacaga tcacaagtgg aaatgaagcc cttcgaatgt
      781 acgcagtgtg ggaagtcctt ctgtaagaag tccaaattca tcatccatca gagagcgcac
      841 acaggagaga aaccgtatgc ttgcggtgtg tgtggaaagt cctttagtca aaaggggacc
      901 ctcactgtac atcggaggtc acacttagag gagaagccct ataagtgcga tgagtgtggg
      961 aagaccttct gtcagaagtt acacctcaca cagcaccaga gaactcactc aggagagaag
     1021 ccctacgaat gtagcgagtg cgggaagacc ttctgccaga agacgcacct tactctacac
     1081 cagaggaatc attcagggga gaggccctat ccgtgtagtg aatgcgggaa atccttctcc
     1141 cggaagtctg ccctcaatga ccatcagaga acacacacag gagagaagct ctacacgtgt
     1201 aacgagtgtg gtaagtccta ctaccggaag tccaccctca tcacgcacca gagaacacac
     1261 acgggggaga agccctatca gtgtagtgag tgtgggaagt tcttctctcg cgtgtcgtac
     1321 ctcaccatac actataggag ccatttagaa gagaaacctt atgagtgtac agaatgtggg
     1381 aaaaccttca atctaaactc cgccttcacc aggcaccgga aggcccatgc agaagagaga
     1441 gtgcaggagt gcggtgagtg tgggaagccg tcccggctgc agtatctccc tgatcacgct
     1501 gatggcctag gagagaagca ccacgggtgt aatgagtgtg ggaagacctt ccttgaaaac
     1561 tcagccttca gcaggcacca gcccgttccc gaaggggaga aaacttacga gtgtaacata
     1621 tgcgggaagg tgttctctga cctgtcgtgc tacactgtgc attacagagg tcattcagaa
     1681 gagaaaccct ttggctgcag cgagtgtggg aaaaccttct ctcataattc atccctcttc
     1741 agacatcaga gagtacacac aggcgagaag ccgtacgagt gttacgagtg tggcaagttc
     1801 ttctcgcaga agtcctacct cactatccat cacaggatcc attcaggaga gaagccgtac
     1861 gagtgtagca agtgtggcaa agtgttctct cggatgtcga acctcaccgt ccactaccga
     1921 agccattcag gagagaagcc ctatgaatgt aatgagtgtg gaaaagtctt ctcccagaag
     1981 tcgtacctca ctgttcatta ccggactcat tcaggagaga agccttatga atgtaacgaa
     2041 tgtgggaaaa aattccacca cagatcagcc ttcaatagcc atcagagaat tcataaaaga
     2101 gggactataa atgtacttaa tgtagaaaat ctctgacgtc tcaattttta aaaagacata
     2161 tggttatagt gaacattggg agtccaatag gtagtcaagg gtgccccccc aaacttttaa
     2221 tatatgtggt gctgggaact gaatatgggc cctttgcatg ctatagaaat tctgcactga
     2281 gctggactgc agtgactcac gagttgagca cccctgctct taaagagtgt gaagtcctaa
     2341 aacaaaatcc attttaacct gaattttcag agcagaatct gtaaagattg ggcaagaagc
     2401 aaaccgttta tgggacacta ggtaattttt acaggagtga aacttcgaaa gtatttaata
     2461 tttatttttt atttaaattg tatttacata tcagggagcg ttgccgagaa ctgtcagccg
     2521 atgagtataa ctcaccttgg acacatacgc taaaagccat atttctgatg tcagaccagg
     2581 tgtctataga caggatgcaa gaagccgtca gctctgagca aagttatgaa atgaaattat
     2641 aaagctagcg cttggccacg aggatgacta aaccacggca cctctgctgt tctagaagtc
     2701 gagcagccat tctatgcaat gtttgccatc tccgcctcga acgattggtg gaaacctggt
     2761 atccaggatt agcaacgcct gttacagtgg gtccattggt gggatatgct atgtgatcgg
     2821 gaagtacata gttttctagg tcactgcttg ccaggagagc ggttttgtaa aaaattttca
     2881 actggaattg agcaaaaaat tttttaaaat actattttga taaa
//
