LOCUS       NM_001191867            2452 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ribonucleoprotein, PTB-binding 2 (Raver2), mRNA.
ACCESSION   NM_001191867 XM_342871
VERSION     NM_001191867.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 2452)
  AUTHORS   Kleinhenz,B., Fabienke,M., Swiniarski,S., Wittenmayer,N.,
            Kirsch,J., Jockusch,B.M., Arnold,H.H. and Illenberger,S.
  TITLE     Raver2, a new member of the hnRNP family
  JOURNAL   FEBS Lett 579 (20), 4254-4258 (2005)
   PUBMED   16051233
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            [WARNING] On Apr 2, 2024 this sequence was replaced by
            NM_001191867.2.
            
            On Jul 17, 2010 this sequence version replaced XM_342871.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-291               JAXUCZ010000005.1  120816693-120816983
            292-358             JAXUCZ010000005.1  120845659-120845725
            359-828             JAXUCZ010000005.1  120851025-120851494
            829-1020            JAXUCZ010000005.1  120855619-120855810
            1021-1147           JAXUCZ010000005.1  120870593-120870719
            1148-1230           JAXUCZ010000005.1  120875655-120875737
            1231-1335           JAXUCZ010000005.1  120877910-120878014
            1336-1447           JAXUCZ010000005.1  120878158-120878269
            1448-1708           JAXUCZ010000005.1  120880388-120880648
            1709-1813           JAXUCZ010000005.1  120881947-120882051
            1814-1950           JAXUCZ010000005.1  120883503-120883639
            1951-2452           JAXUCZ010000005.1  120893649-120894150
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..2452
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /note="ribonucleoprotein, PTB-binding 2"
                     /db_xref="GeneID:362551"
                     /db_xref="RGD:1307610"
     exon            1..291
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..2097
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /note="ribonucleoprotein PTB-binding 2-like"
                     /codon_start=1
                     /product="ribonucleoprotein PTB-binding 2"
                     /protein_id="NP_001178796.1"
                     /db_xref="GeneID:362551"
                     /db_xref="RGD:1307610"
                     /translation="MAARGGGAGGPGSGSGPSAGTAGEAVEPALRPGEVAALHPQEVA
                     ARLQRMRRELSNRRKILVKNLPQDSSSQEVHELLQDYELKYCYVDRNKRTAFVTLLNG
                     EQAQSAIQRFHQFSFRGRELTVQLQPTDALLCITNLPVSFTLEEFEELVRAYGNIERC
                     FLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALFAQWMDVNLLASELIH
                     SKCLCIDKLPSDYSDSEELLQLFSSIHKPVFCQLAQDEGSHGGGFAVVEYSTAEHAEE
                     VQQVADGITIKGSQVQLSFCAPGAPGRSTLAALIAAQRAMHSNQKGLLPEPNPVQIMK
                     SLNNPAMLQVLLQPQLCGRAVKPVLGVTPSLSHLLSPSLPSALLHFSKAQQSSAVGNT
                     SSLLLQNLSPLPLIQQPLMKFDNAHTNNKPGLLGEPPAMVLQPALAIGPPLPLKTDLG
                     HHGEAHKTSNLIASQTTLAAGLGVLPFFPHQLTAGQAGPGRGTTQETQSAPVSSSEAS
                     FSGSQHYLQTFPGLPGGGPLTGNQKTLQGQPKGAEVASKNQTSLLGEPPKEIRLSKNP
                     YLNLASVLPSVCLSTAGKGTPPKTGIASNILDVISQGSESQHALEKCIAYSPSFEDFA
                     QVSSLRNEKRGSSYLISAPEGGPVELAGQHPQDTGVSYTETYLKKKRVY"
     exon            292..358
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            359..828
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            829..1020
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1147
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1230
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1335
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1447
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1448..1708
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1709..1813
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1950
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
     exon            1951..2452
                     /gene="Raver2"
                     /gene_synonym="RGD1307610"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccccgcgc ggcctctccg ctttctctcc cgcttcgctc cggcctctcg gagtctgcag
       61 cggggcgccg ggaagatggc ggcgcgggga ggcggcgcgg ggggcccggg ctcgggatcc
      121 ggaccctctg ctgggacggc gggggaggcc gtggagcccg cgctgcgccc gggggaggtg
      181 gctgcgctgc acccccagga ggtggctgca cggctgcagc ggatgcgacg ggagctgagc
      241 aaccggagga aaatcctggt gaaaaacctg ccccaggaca gcagctccca ggaggttcat
      301 gagttattac aggactatga gctaaagtat tgctatgtgg acaggaataa acgaacagcc
      361 tttgttacct tgttgaatgg ggagcaagca cagagtgcaa ttcagaggtt ccatcagttt
      421 tctttccgag gcagagagct gacagtgcag ctgcagccca cagacgctct gttgtgcatc
      481 accaacctgc ccgtctcgtt cacgttagaa gagtttgaag aactcgtccg tgcctatggc
      541 aatatcgaga ggtgtttttt ggtctacagt gaagtgaccg gccactccaa aggctatggg
      601 tttgtggagt acatgaagaa ggactttgct gccaaggcca gactggagct actgggcagg
      661 cagatgggag cctcggccct cttcgcacag tggatggatg ttaatctctt ggcctcggag
      721 ctcatccatt ctaagtgcct ttgtatagat aaactcccca gtgactacag cgattcagaa
      781 gagctcttgc aacttttttc tagtatccat aaacctgtgt tttgccagct tgcacaggat
      841 gaaggaagtc acggtggtgg ctttgcagtg gttgaatata gcacagcgga gcacgctgag
      901 gaggtccagc aggtggcaga tggcatcacc atcaagggga gccaagttca actgtccttc
      961 tgtgccccag gagcaccagg gcgaagcact ctcgcagccc tcatagcggc tcagcgcgcg
     1021 atgcacagta atcaaaaggg attactgcca gaacccaatc cggtacagat tatgaaaagt
     1081 ttaaacaatc ctgccatgct acaagttctt ctgcagcccc agctctgtgg acgggccgtg
     1141 aagccagttc tcggagtcac acccagccta tctcatctgc tgagtccgtc cctcccctcc
     1201 gcgctcttac acttcagtaa agcacagcag agctcagctg tgggtaacac atcatcctta
     1261 ctccttcaga atctttctcc cttacctttg atacagcaac cgttgatgaa gtttgacaac
     1321 gcccacacta ataataagcc tggcttgctg ggagagcctc ccgccatggt gctgcagcct
     1381 gctctggcaa tagggccacc acttccactg aaaacggacc tgggacatca tggagaagca
     1441 cacaaaacgt ctaatctgat tgcaagtcag acgacactgg cagctggact gggcgtgttg
     1501 ccattcttcc cacaccagct cactgctggg caagccgggc cggggcgtgg gaccactcag
     1561 gagacgcagt cagccccggt gagcagcagc gaagctagtt tctcagggtc acagcattat
     1621 ctgcagacct tcccaggcct tcctggtgga ggtccactga cgggcaacca gaagaccctg
     1681 caaggccagc cgaaaggcgc ggaggtagcc tctaagaatc agacttcact cttgggagaa
     1741 ccaccaaaag aaatccggct cagtaaaaat ccatatttga atttggcaag tgtgttgccc
     1801 agtgtttgcc tatccactgc aggcaaaggc acgccaccaa agactggaat tgcgagcaac
     1861 attctggatg tgatctctca gggaagtgag tcccagcatg cactggagaa gtgcattgcc
     1921 tattctccat ctttcgagga ttttgcccag gtgtcctcct tgaggaatga gaagcgaggc
     1981 tcctcctatc tcatctctgc cccagaagga ggcccggtag aactcgctgg ccagcaccct
     2041 caggacacgg gagtgagcta cacagagacc tacttgaaga agaagcgtgt gtactaagcc
     2101 tggtgtctcc tgcccgccgc tgcggtcccc tgcagcgcct gctgctcctc gctgccttaa
     2161 ctccattcac actagccata tccttgatac gggtgtctga cttcccagga ggaactgact
     2221 gcagcaggca gatcagccaa atacccaact agcaataaga aacatcaccg gccgagggca
     2281 tttcccacta gcgctagacg tgtcttaatc catgtggtaa ggactcctcc gcccactgga
     2341 gaatctgcat tccaacagtc cttgtttcgg gcctgggaac aattttgaca tcatatataa
     2401 agtctgaagc aataaacggg aaaccgtttc gtttccttag ccttagaatg aa
//
