LOCUS       NM_001013939            3473 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribonucleoprotein, PTB-binding 1 (Raver1), mRNA.
ACCESSION   NM_001013939 XM_216612
VERSION     NM_001013939.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3473)
  AUTHORS   Gromak,N., Rideau,A., Southby,J., Scadden,A.D., Gooding,C.,
            Huttelmaier,S., Singer,R.H. and Smith,C.W.
  TITLE     The PTB interacting protein raver1 regulates alpha-tropomyosin
            alternative splicing
  JOURNAL   EMBO J 22 (23), 6356-6364 (2003)
   PUBMED   14633994
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083865.1.
            
            On Apr 20, 2005 this sequence version replaced XM_216612.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083865.1, SRR8487230.154767.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..3473
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /note="ribonucleoprotein, PTB-binding 1"
                     /db_xref="GeneID:298705"
                     /db_xref="RGD:1359190"
     exon            1..235
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..2263
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /note="protein raver-1; RAVER1 homolog"
                     /codon_start=1
                     /product="ribonucleoprotein PTB-binding 1"
                     /protein_id="NP_001013961.1"
                     /db_xref="GeneID:298705"
                     /db_xref="RGD:1359190"
                     /translation="MAADVSVTHRPPLSPEAEAEAETPETVDRRTPEQELPPLDPEEI
                     RKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLN
                     GEQAEAAINTFHQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLER
                     CFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALL
                     HSRCLCVDHLPPGFNDVDALRQALSAVYTPTFCQLASGQDGQLKGFAVLEYETAEMAE
                     AAQQRADGLALGGSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLL
                     NNLGPSASLQLLLNPLLHGGASGKQGLLGAPPAMPLLSGPALSTALLQLALQSQNQSQ
                     SQSQKKPGILGDSPLGTLQAGAQPSNSLLGELSAGGGLAPELPPRRGKPQPLLPPLLG
                     PSGGDREPMGLGPPASQLTPPPAPMGLRGSSLRGLPKDSGPLPTPPGVSLLGEPPKDY
                     RIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGGGNASNNGSK
                     AFPMKPRLLSPIASNRLPPEPGLPDSYSFDYPTDVGPRRLFSHPRESNLGAHGPSRHK
                     MSPPPSSFSEPRSGGGSGGPLSHFYSGSPTSYFTSGLQAGLKQSHLNKAVGSSPMGSS
                     EGLLGLGPGPNGHSHLLKTPLGGQKRSFSHLLPSPEPSPEGSYVGQHSQGLGGHYADS
                     YLKRKRIF"
     exon            236..302
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            303..772
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            773..964
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1094
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1207
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1295
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1507
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1508..1813
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1888
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            1889..2032
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            2033..2116
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..3455
                     /gene="Raver1"
                     /gene_synonym="Raver1h"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccgggttt cccaagatgg cggccgacgt gtccgttact caccggccgc cgctcagccc
       61 ggaggcggag gccgaagcgg aaactcccga gaccgtcgat cgccggacac ccgaacaaga
      121 gttgccgccg ctcgatccgg aagagatccg gaaacgcctg gaacacactg agcgccagtt
      181 ccgtaaccgc cgcaagatac tgatccgagg cctcccgggg gacgtgacca accaggaagt
      241 acatgacctc ctgagcgact acgaactcaa gtactgtttc gtggacaaat acaaagggac
      301 agcttttgtg accctgctga atggggagca ggctgaagct gccatcaaca ccttccacca
      361 gagccgcctt cgagagcggg agctgtcagt tcagttgcag cctactgatg ctctgctgtg
      421 tgtggccaac ctgccaccta gtctgacaca ggcgcaattt gaagagctgg tgcggccctt
      481 tggcagcctg gagcgctgct tcctagtgta cagtgagcgc actggccact ctaaaggcta
      541 tggctttgca gagtacatga agaaagactc ggctgccagg gccaagtctg acttgctagg
      601 caagccactg ggcccacgca cactgtacgt gcactggaca gatgctgggc agctgacccc
      661 tgcattgttg cactctcggt gcctctgtgt ggaccacctg ccacctggct tcaacgatgt
      721 ggatgctctg cgccaggctc tgtcggcggt ctataccccc accttctgtc agctggcaag
      781 tggccaggat gggcagctaa agggcttcgc ggtactggag tacgagacag cagagatggc
      841 agaggcagca caacagcggg cagatggcct ggccctgggt ggcagccacc tacgtgtgtc
      901 tttctgtgct ccaggtcccc caggccgcag catgttggcg gcactcattg ctgcccaggc
      961 cacggctctc aatcgaggca agggactcct gcctgagcca aatatcctgc agctattgaa
     1021 caacctgggc ccatctgcct ccctccagct gctcctcaac cccctgctgc atggaggtgc
     1081 cagtggcaag cagggcctcc tgggtgcgcc ccctgccatg ccgctgctca gtgggcctgc
     1141 cctgtctact gcactgctgc agctagccct gcagagccag aaccagagcc agagccagag
     1201 ccagaagaag cctgggatcc tgggagactc acctctgggt accctccagg ccggggccca
     1261 accttccaac tctctcctag gagagctgtc tgcagggggg ggcctggccc cggaactgcc
     1321 gccccgccga gggaagccac aacccttact accaccattg ctgggcccct ctgggggtga
     1381 ccgggagccc atgggtctgg gtcccccagc atcccagctc actccacccc cagcccctat
     1441 ggggctccga ggctccagtc ttagaggcct cccgaaggac agtgggcccc tgccaacgcc
     1501 ccctggggtc tcactgctgg gggaaccccc aaaggactac cgcatccccc tcaaccccta
     1561 cctgaatcta cacagcctgc ttccatccag taacctagca ggcaaggaga cccggggctg
     1621 gggaggctct gggagaggcc gccgcccagc ggagcccccc ttgcctagcc ctgcagttcc
     1681 tggtggaggc aatgctagca acaatggcag caaagccttc ccaatgaagc cccgcctgct
     1741 cagccccatc gccagcaacc gcctgccccc tgagccaggg ctgcccgaca gctacagctt
     1801 tgattacccc acagatgtgg gacctagacg gctcttctcc caccctcggg aatcaaactt
     1861 aggggctcat ggccccagcc gacacaagat gtccccccca cctagcagct tcagtgagcc
     1921 tcgcagtggt ggaggcagtg ggggacccct ctctcatttc tattctggct cacccacctc
     1981 ctacttcacc agtggcctac aggctggcct caagcagagc cacctgaaca aggctgtcgg
     2041 ttcctcccca atgggctcca gtgaagggct cctgggcctg ggcccagggc ccaatggtca
     2101 cagtcacctg ctgaagaccc cactgggtgg ccagaaacgc agtttttccc acctgctgcc
     2161 ctcacctgag cccagcccag aaggcagcta cgtgggccag cactcccagg gccttggtgg
     2221 ccactacgcg gactcctacc tgaagcggaa gaggattttc taaggggtca gcgccagaga
     2281 tgctccaagg gcctgcacca agttgctttt gggttctttc tggtatttgt gttttgtggg
     2341 attttatttt tattattttt tttatgtcct ttctttgggt aatagagaaa tctctgcaaa
     2401 agactttggt gaccaaccag ctggagctca aggaatgtgg ggtatctggg ggccatacca
     2461 ttacctgtgg gcttgctcct ggaaccaaac cctgcagcct taagagagag gggcctggcc
     2521 tgctctcttt ccctccccag ctcctggcct tctgtgttgg ctctccaggc ctcctctcct
     2581 gcctcatcac tcctgtgttc tggccttttg agtgcctttg gaggtgtccc tgacctgtga
     2641 ggatcagaga cagtccccgt ttttaaactt cgacaattaa ctttgatttc cttttctaat
     2701 ttttattatt ttttaaaaca accaggatga tgaccacatc cactccccta tccctccaga
     2761 aagccccaac ttgatttctt cagggtctgg ccttccctgg gcctctgttc caacagctta
     2821 accccattct cttcccagtc atctgctgca ggtatagctg tgtcatgccc ctgcctgcct
     2881 actccggcca gtaccctaag ccccaggatc tccagcccct gccttctgat gccttaaagt
     2941 tgggccacag gtcctgctgg gtcagagcct ctcagatgcg gagctccaaa agctcagctc
     3001 aggaccaaag agctctggcc tagggttcat cctttctcca gggtgtctgc cctctggaca
     3061 gaaggccaaa gccttggtct tggcaaacca ccccttttgc cctaagcttg ggtgcagaga
     3121 ccagtatttt ctgctggctt caacagtgtc ccctgctgtc tgtgaaaggt gaccattgta
     3181 cccaggccac tggacctcta ccatgttcct tcaaacccag atcatcacca tccccaggct
     3241 ggatcactgg agcaggtctc ctctctgccc atctgagggg acctagggac tctgcccctg
     3301 gccagctgag ccaccaccag cctccctcct caaacctgat gaaccaaact cactccagta
     3361 gggggcattc cctccccttt cccccttcct gccctcccct gctccctgac ctttgctgaa
     3421 ttaaagtttg taagtaaacg gttttaagaa aaaaaaaaaa aaaaaaaaaa aaa
//
