LOCUS       NM_001024275            2444 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus Ras association domain family member 4 (Rassf4),
            mRNA.
ACCESSION   NM_001024275
VERSION     NM_001024275.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2444)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 23, 2021 this sequence version replaced NM_001024275.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC093620.1, SRR26360194.825053.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840106,
                                           SAMN12840107 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-70                JAXUCZ010000004.1  151604814-151604883 c
            71-161              JAXUCZ010000004.1  151592057-151592147 c
            162-237             JAXUCZ010000004.1  151589562-151589637 c
            238-380             JAXUCZ010000004.1  151580167-151580309 c
            381-472             JAXUCZ010000004.1  151578883-151578974 c
            473-633             JAXUCZ010000004.1  151578098-151578258 c
            634-735             JAXUCZ010000004.1  151574793-151574894 c
            736-787             JAXUCZ010000004.1  151574531-151574582 c
            788-909             JAXUCZ010000004.1  151573314-151573435 c
            910-1007            JAXUCZ010000004.1  151572534-151572631 c
            1008-2444           JAXUCZ010000004.1  151569984-151571420 c
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2444
                     /gene="Rassf4"
                     /note="Ras association domain family member 4"
                     /db_xref="GeneID:362423"
                     /db_xref="RGD:1307785"
     exon            1..70
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            71..161
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..1068
                     /gene="Rassf4"
                     /note="Ras association (RalGDS/AF-6) domain family 4; Ras
                     association (RalGDS/AF-6) domain family member 4"
                     /codon_start=1
                     /product="ras association domain-containing protein 4"
                     /protein_id="NP_001019446.1"
                     /db_xref="GeneID:362423"
                     /db_xref="RGD:1307785"
                     /translation="MKEDCSPSSHVPISDSKFILKSELLSLLKTYNCYHEGRSFQLRH
                     REEEGTLIIEGLLNIAWGLRRPIRLQMQDDRERVHLPSATWVPERLSYLQKDASPQDS
                     KVPAEEPSTQPANKGEVSRDGSGPLQEEEEEVPQLMRTKSDASCIIQRRCKSRAPGEA
                     QKIRRHRFSINGHFYNHKTSVFTPAYGSVTNVRVNSTMTTQQVLTLLLNKFRVEDGPS
                     EFALYTVHESGEQTKLKDCEYPLISRILHGPCEKIVKIFLMEADLSEEVPHDVAQYIK
                     FEMPVLDSFVEKLKEEEEREIIKLTMKFQALRLTMQQRLEQLVEAK"
     exon            162..237
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            238..380
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            381..472
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            473..633
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            634..735
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            736..787
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            788..909
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1007
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..2444
                     /gene="Rassf4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgccggca ctattctggt gcaggcgaac tctcttgctg gtggcctctg gaccgcgcga
       61 tgactggacg gtgacttccg ggtctgagga gagttgaaga tgaaggaaga ttgctcgccc
      121 agttctcatg tgcccatcag cgacagcaag ttcattctaa agtcagagct cttaagcctg
      181 cttaaaacct acaactgcta ccacgagggc aggagcttcc agctaagaca ccgagaggaa
      241 gaagggactc tgatcatcga aggactcctc aacatcgcct ggggacttag acggcccatc
      301 cggctccaga tgcaggatga tcgggaacga gtgcacctgc cttctgccac atgggtgcct
      361 gagcggctca gttacctcca aaaggacgct tcaccccagg acagcaaggt ccctgctgag
      421 gagcctagca ctcaacctgc aaataaggga gaggtttcca gagatggctc aggacccctg
      481 caggaagaag aggaggaggt cccgcagctt atgcggacaa agagtgatgc cagctgtata
      541 atccagagga ggtgcaaatc ccgggcaccg ggcgaggccc agaagattcg acggcaccgg
      601 ttctccatca atgggcactt ttataaccac aagacctcgg tgttcacgcc tgcctatggg
      661 tctgtgacca acgtccgggt taacagcact atgaccaccc agcaggtact caccctgctg
      721 ctaaacaagt tccgggtaga agatggcccc agtgagttcg cactctacac cgtccatgag
      781 tctggggagc agacaaaatt gaaagattgt gagtacccac tgatatccag aatcctgcat
      841 gggccctgtg agaaaattgt caagatcttc ttgatggaag ctgacttgag tgaggaagtg
      901 ccccatgatg ttgcccagta cattaagttc gaaatgccag ttctggacag ctttgttgaa
      961 aaattaaaag aagaggagga gagagaaata atcaaactga ccatgaagtt ccaagctttg
     1021 cgcctgacaa tgcagcagcg tctggaacag ctggtggagg ccaagtaact agccagagct
     1081 tgccttttgt gattcccgtg gtagcaagta cacatggaat ctcagggacc cagccctaac
     1141 tgatcactga ccgatgcctg ctgcctaagg aatccagtac ctatgcgtat tccacctgtc
     1201 cacagattac ctagcaccct gtgtctctag tcttggtacc atagggagca cgtaaggcac
     1261 acccaggaac ttgctagtca ggatctatgt gcaaagctgg cctagatggt aataaagagc
     1321 cttggaactg cggtgccggc cacactgtat ggttgaatag tatggtcagc cttgttcctg
     1381 tgtatttcca gtctgagaga gcaatatagc acccagcccc tggagaatgg gcttcatctg
     1441 cttgcccagt gtctgtctct gagcctctgc atggccacaa gtccctgccc ttatcatcca
     1501 tgtgaaccat gaacccctgg tcttcccttg tttcttattg ccactcagga actgaactgg
     1561 ggcaggagct gccaacagcc atgagacgtg gcttgcttct atctactgct tcaccatgat
     1621 gtcctggcct ctgagcctcc tttcctagcc aacattcctg gcccagaggt tagatcagga
     1681 ctaggactat caatatctca tcagtttttg gcataaatca cccttagctt gtgagtgtga
     1741 tccaaagaaa ttcttgaaag gagttgtctt caagaaatat gtccatcaaa ttgttttggg
     1801 agttgactcg tgtagcactg gaacagctgg gcagtggctt cagaaggttc agtccccttt
     1861 actccatctt gtggatgtct atatgtctct tgctttcctt ggcactgagc ttctttctct
     1921 gtagtggata gggacagctc tcaatacatc ctatgaaagc tcgacaaaaa atggaaaaaa
     1981 tgtctgtttg aggacaaaag gcttctaatc ccctagaaat ggatacagaa caatttgctg
     2041 actgaaatct ctggcatgaa tgagaaaact tcatttgtaa aactatgcaa tggtttacat
     2101 caattgtgga aatggctgtc taacagcaaa ctaaaggcca gcttcctccc ctgaggtcca
     2161 aggccagtag atttaaagag aagtgtgatg gaagcctttg gagacagagt tctatcctca
     2221 atgcagtgca tgtgaaagcc tctcacagag tcctgaagag caaaatgtga gaacagctgt
     2281 gcagtgtgaa accacgaagc agggtggatg tcacccctag gttttctgga cccagctctg
     2341 tttcaccgag atgcttagct gccaagggag gtttcttgcc tcctcgattc tttggcactg
     2401 tattttcttc agtgcttaat aaaggtctgt tgtgttgaac agaa
//
