LOCUS       XM_039085217            3076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid receptor, alpha (Rara),
            transcript variant X5, mRNA.
ACCESSION   XM_039085217
VERSION     XM_039085217.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3076
                     /gene="Rara"
                     /note="retinoic acid receptor, alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 28 ESTs, 4 long SRA reads, 62 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:24705"
                     /db_xref="RGD:3534"
     CDS             388..1776
                     /gene="Rara"
                     /codon_start=1
                     /product="retinoic acid receptor alpha isoform X1"
                     /protein_id="XP_038941145.1"
                     /db_xref="GeneID:24705"
                     /db_xref="RGD:3534"
                     /translation="MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSL
                     QHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGV
                     SACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRN
                     DRNKKKKETPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRV
                     SLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTR
                     YTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICL
                     ICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGA
                     ERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQSGGGTRDGGGLAPPPGSCSPSLSP
                     SSHRSSPATQSP"
ORIGIN      
        1 tcccaagcat tctggcatca caggacatgc ctccccccag ccacctagct ggggcccttc
       61 tgggagtgcc atcctttttg ataccctgaa gaccagctct ggaccttcct acaaaagtgt
      121 cagctcccag gactgcttaa ccaaaggaca gactcttggg acatccccca acccacctgg
      181 cccccctggc tagggagggg gctccagaag gctgaagttg actaacttgg gactgctgct
      241 ccagggacag aagggggtgg gggtgggctg accacccaaa ccccctctgg gcccaggcct
      301 catgccccga ggaagagaga ctgcgtgaaa cccatcacag ctgcctgtca gactgtctgc
      361 ctgcccttct gactgtggcc gcttggcatg gccagcaata gcagttcctg cccgacacct
      421 gggggcgggc acctcaatgg gtacccagta cccccctacg ccttcttctt cccccctatg
      481 ctgggtggac tctccccacc aggcgctctc accagcctcc agcatcagct cccagttagc
      541 ggctacagca caccgtcccc agccaccatc gagacccaga gcagcagttc ggaagagata
      601 gtgcccagcc ctccctcacc accacccctg cctcgaatct acaagccttg ctttgtttgt
      661 caagacaagt catccggcta ccactatggg gttagcgcct gtgagggctg taagggcttc
      721 ttccgacgca gtatccaaaa gaacatggtg tatacgtgtc accgggacaa gaactgcatc
      781 atcaacaagg tgacccggaa ccgctgccag tactgccggc tgcagaaatg cttcgaagtg
      841 ggcatgtcca aggagtcggt gcgaaacgac cgaaacaaaa agaagaaaga aacacccaag
      901 cccgagtgct cagagagcta cacgctgaca ccggaggtgg gggaactcat cgagaaggtg
      961 cgcaaagcac accaggagac cttcccggcc ctctgccagc tgggcaagta cactacgaac
     1021 aacagctcag aacaacgtgt ctctctggac attgacctct gggacaagtt cagtgaactc
     1081 tccaccaagt gtatcattaa gactgtggag ttcgccaagc agcttcccgg cttcaccacc
     1141 ctcaccattg ccgaccagat tacccttctc aaggctgcct gcctggacat cctgattctg
     1201 cgaatctgca cgcggtacac acctgagcaa gacacaatga ccttctcaga tggactgacc
     1261 ctgaaccgga ctcagatgca caacgctggc tttggccccc tcaccgactt ggtctttgcc
     1321 ttcgccaacc agctgctgcc cctggagatg gacgatgctg agaccggact gctcagtgcc
     1381 atctgcctca tctgtggaga ccgacaggac ctggagcagc cagacaaggt ggacatgctg
     1441 caggagccgc tgttggaagc actgaaagtc tatgtccgga aacggaggcc cagccgaccc
     1501 cacatgttcc ccaagatgct gatgaagatc acggaccttc ggagtatcag cgccaaggga
     1561 gctgaacggg tgatcacatt gaagatggag atccctggtt ccatgccacc acttatccag
     1621 gaaatgttgg agaactctga gggcttggac actctaagcg gacagtcggg gggcggaaca
     1681 cgagatgggg gtggcctggc ccctcctccg ggtagctgta gccccagcct cagtcccagc
     1741 tcccacagaa gcagcccagc cactcaatcc ccatgaccac ctcgacacat ggacagccct
     1801 cacccctgcc ctggctttct ctgccttcct actggccatg tgacctatca gcccagccct
     1861 gcttgtcctt ccggacagaa ctggggacct tccagggggg acaggaggga gaaggcagtg
     1921 actctgtgga cagaggcctg gaccctgaga tggactgctc tctcctggca gcctgggctg
     1981 gcatcagggg ccaggcattg agccacgtga ggacctgggc ctgagccctc acccagcttg
     2041 ccatgtcttc atcaccagca aacaccaggg cctggctccc tgtcctccga actcaagcca
     2101 tcacccccca gttggggaac ttccccctgc ttcggatggt gacagaagat gcccagggtg
     2161 ggggagaccc cctgtacata tcctgcgtac caacccccag atattaattc tcgatggttt
     2221 tgtttttatt ttaatttttt ttgttttgtt tttttttaat aagaattttc attttaagca
     2281 catttatact gaaggaattt gtgctgtgta ttgggggagc tggatctaga gctgaagggg
     2341 gtgggccctg gggatgggca gggctcagaa gggctcccct ctcccctgat gtccgagcgg
     2401 atgctcccac ctccagtctt ttctcctcag ttttctctaa tactgtgaaa aactaacttt
     2461 ccaaggccac cttccctacc ctgtgcagga aagcagctcc ctcctccctt tgcctagcca
     2521 ctgggtgtgg gcatcttggg cagctacccc tgggaggagg agatcctggc ttttggcttg
     2581 tctccttact caccaagaag cagggtaagg gtgaagctag ggcccctggg atgagtaggc
     2641 tgttactcct cactgcccgt cagagctcac ttcatccaag ccccagcccc actgtgaagg
     2701 ggccggctaa ggggtccaag tttaccccag cccccagcct catagccacc agcaccccat
     2761 ggggccctcc aacacacatg cgcatgtact catgcgtgga cacacacaca cacacaaaca
     2821 cacacataca cacacacacc tctggcctga gttcctccaa ttccccccag cctaccccta
     2881 acccctcagc cccctccttg ccccgcagga cgggactcca gggggtcccc tcccctacac
     2941 ccctgggctg ggggagcagg ctctaccttg ccctcctgcc tgggtggggt ctcaccctgg
     3001 agcccactgg tgcacttgtt cctgctgggt ttccactgag atctactgga gaaagaataa
     3061 agttctattt attcta
//
