LOCUS       XM_039083871            2874 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Ras association (RalGDS/AF-6) and
            pleckstrin homology domains 1 (Raph1), transcript variant X12,
            mRNA.
ACCESSION   XM_039083871
VERSION     XM_039083871.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2874
                     /gene="Raph1"
                     /note="Ras association (RalGDS/AF-6) and pleckstrin
                     homology domains 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363239"
                     /db_xref="RGD:1308387"
     CDS             345..2282
                     /gene="Raph1"
                     /codon_start=1
                     /product="ras-associated and pleckstrin homology
                     domains-containing protein 1 isoform X10"
                     /protein_id="XP_038939799.1"
                     /db_xref="GeneID:363239"
                     /db_xref="RGD:1308387"
                     /translation="MEQLSDEEIDHGAEEDSDKEDQDLDKMFGAWLGELDRLTQSLDS
                     DKPKEPVKRSPLRQETNMANFSYRFSIYNLNEALNQGETVDLDALMADLCSIEQELSS
                     VGSGNSKRQVTEPKVAQKLPASRHTSKHGTLRGVSSSSTRTTRPPHANYSLDDITAQL
                     EQASLSMDEAAQQSAVEDAKPPATNQHRRTASAGTVSDAEVRSVSNSSRSSITSAASS
                     MDSLDIDKVTRPQELDLTAHQGKPITEHATSLSCPSKQAKHHSDFTEEQAQLAPHSYL
                     DRETSLLLRNIAGKPSHLLTKEEQAAKLKAEKIRVALEKIKEAQVKKLVIRVHMSDDS
                     SKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETISELQMERIFEDHENLVENLLN
                     WTRDSQNKLIFMERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVP
                     EIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQD
                     YRNKYKAPTDCCLALKHPQIQKKSQYIKYLCCDDARTLHQWVNGIRIAKYGKQLYTNY
                     QEALKRTESAYDWTSLSSSSIKSGSSSSSIPESQSNHSNQSDSGVSDTLPSGHIRSQS
                     TVSSIFSEAWKRGTQLEESSK"
ORIGIN      
        1 gccagcgccg gaagtgagcg gtggccgcgc cgaggagcgc gcggccgggc gcgaggcggt
       61 ccgcccctgg gccccgcggc cctcagcccc gccctgtatg ccggggccgg acgcgcgggc
      121 tctgtgatcc ccgccgcccg gctctgcggc cgacccgccc agttcccgcc gacgcccgct
      181 ctgtgggtcg gtcagtcagt caccgagcgc gcgccgcggg agctgcggtc gctctcagcg
      241 ttcgggagag gagcgtcgcg cctggcgagg cggcagcggc ggctggaggg cgcgagcagc
      301 tgctgcctag cgcggggctc cgggagggcc gaggggctgc cgcgatggag caactatctg
      361 atgaagagat tgaccatggt gcagaagaag acagtgacaa ggaagatcag gacctggaca
      421 aaatgtttgg ggcctggctt ggggagctgg acagacttac tcagagtttg gattctgaca
      481 agcccaaaga accagtgaaa agatctcctc ttcgccagga aacaaatatg gccaactttt
      541 cttaccgttt ctccatatac aacttgaatg aagctctgaa tcagggtgag actgtggatc
      601 tggacgccct gatggccgat ctctgctcta tagagcagga gctcagcagt gttggctcag
      661 gaaatagtaa gcgccaagtc acagaaccca aagttgctca gaagctacct gctagccgac
      721 atacatcaaa acatggtacc ctgagaggag tgtcatcttc ctctactaga acaactaggc
      781 ctccgcatgc taactactcc ctggatgaca tcactgcaca gttagaacag gcttccttga
      841 gcatggacga ggctgctcag cagtctgcag tagaagatgc taagcctccc gcaacaaacc
      901 agcacagaag gaccgcatca gcaggcaccg tgagtgacgc cgaagtgcgc tccgttagca
      961 actcctcccg gtcgagcatc acttctgcgg cctccagcat ggattctctg gatattgaca
     1021 aagtcacacg ccctcaagaa ctggatttga cagcacacca gggaaagcca attactgagc
     1081 atgctacctc tctgagctgt cccagtaagc aggccaagca ccactctgac ttcactgaag
     1141 agcaggccca actggcacct cactcctatc tggacaggga aacctccctt cttctgagaa
     1201 acattgcagg gaagccttcc catttgctga ccaaggaaga acaggcagca aaactgaaag
     1261 ctgagaagat ccgagttgct ctggagaaaa ttaaagaggc tcaagtgaaa aagctggtga
     1321 tcagggtcca catgtctgat gacagttcta aaacaatgat ggtggatgag agacagacag
     1381 tgagacaagt gctggataac ctgatggaca aatctcactg tggctacagt ttagactggt
     1441 cgctggtgga gacaatttct gagttacaaa tggaaagaat ctttgaagac catgaaaact
     1501 tggttgaaaa tcttcttaat tggacaagag acagccaaaa taagcttata tttatggagc
     1561 gtatagaaaa atatgcactt tttaaaaacc cccagaatta ccttctaggg aaaaaggaaa
     1621 cggctgagat ggcagacaga aacaaagaag tgctgttaga ggaatgtttt tgtggaagtt
     1681 ctgtaactgt cccagaaatt gaaggagtcc tttggttgaa agatgatggc aagaagtcct
     1741 ggaaaaagcg ttattttctc ttgcgagcat ctggtatcta ctatgtccct aaagggaaag
     1801 caaaggtatc tcgggatcta gtgtgctttc tccagctgga tcatgtaaat gtatactatg
     1861 ggcaggacta tcggaacaaa tacaaagcac ccacagactg ctgtctggcc ttaaagcacc
     1921 cacagatcca gaagaagtct cagtacatca agtacctttg ttgtgatgat gcaaggaccc
     1981 tgcatcagtg ggtcaatggg atccgcattg ccaagtatgg gaagcagctc tacacgaatt
     2041 accaagaagc cttgaagagg acagagtcag cttatgattg gacctcttta tccagctcca
     2101 gcattaaatc cggatccagt tcttccagta tcccagagtc tcagtccaat cactctaatc
     2161 agtctgacag tggagtgtct gacaccctgc cctccggaca catccgctcc caaagtactg
     2221 tgagctctat cttctcggaa gcctggaagc gaggcactca gttggaagag tccagcaagt
     2281 aaaacaaatg taaagagtac accccttacc tgcactgctg gacttctgtg catgtggatg
     2341 caagtgtttc ccacgagcac gtgtgtgtgt gtccagctca ttcactgctg tgtgactgtg
     2401 cacgcctgct gagcatcctc ctattctcac atgtcagctc actagaacca aaaagccgtc
     2461 ctcactcctc aggaagccct ccaccagcat cctgagccta ggacgttatc agcttgatgt
     2521 ggatgcagta atggacagaa ggtgaactct tgagcacagg aggcataggg cagggtttgc
     2581 caaagttcca tagccagggc acaaatcaca caccctgtca ccacaggaac tcatccctag
     2641 atggtcagtc agtacagcat aggagaatat tgcagggtgg ggcaaattct ctttgtccct
     2701 gttaatcagg aaatcagatt ttaacccttc ctgacattgt ccatctttat aatcaccagc
     2761 tgctgcatcc tctctatgca tgtcctaaat tccttgctgt ttagtttcat ggagctaaag
     2821 cttacctctg taactgttgt tgtttctctc cctcccgctc cctttttata ctcc
//
