LOCUS       XM_039096248            3370 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RAN binding protein 9 (Ranbp9),
            transcript variant X1, mRNA.
ACCESSION   XM_039096248
VERSION     XM_039096248.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 22, 2024 this sequence was replaced by
            NM_001427414.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3370
                     /gene="Ranbp9"
                     /note="RAN binding protein 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 60 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     234 samples with support for all annotated introns"
                     /db_xref="GeneID:364686"
                     /db_xref="RGD:1561940"
     CDS             380..2509
                     /gene="Ranbp9"
                     /codon_start=1
                     /product="ran-binding protein 9 isoform X1"
                     /protein_id="XP_038952176.1"
                     /db_xref="GeneID:364686"
                     /db_xref="RGD:1561940"
                     /translation="MSGQPPPPPPQQQPPPPPAAGAPGSGVALPAPAAASAGSSPAGS
                     PGGGLGAAAAALLLHPPPPPPPPPATAAPPPPASAAAPATAPPGLAVGPGSVAGVPVP
                     GLAAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRSWSPKDKFSYIG
                     LSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQ
                     GVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYT
                     KNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQI
                     DRFPIGDREGEWQTMIQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQ
                     KLVLAGRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGGRSPK
                     SQDSYPVSPRPFSSPSMSPSHGMSIHSLAPGKGSTAHFPGFESCSNGVISNKAHQSYC
                     HSKHQLSSLNVPELNSINVSRSQQVNNFTSNDVDMETDHYSNGVGETSSNGFLNGSSK
                     HDHEMEDCDTEMEVDCSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRECGKNTAN
                     KKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMG
                     QATQCLGLMARAGVGSCAFATVEDYLH"
ORIGIN      
        1 gctcgcccgc cgggaaacag ccgcgagagc agcggccgcc ccggccgctc gcaccccttg
       61 cagcctctcc gcttcatcgc gtcgcctagg gccgcgcgcc ctcccgcccg cctgcccgcg
      121 cccctcgccg tcccaccgca tcgctccggg tcgcgtgccc gccagcgcct ggccaacgct
      181 ccctcgcgcc ctcccgtctg cccgcccgcg gccggtctcc tcaaccgccg cgctccgccg
      241 ggccgcgcgg cccgccgcct gcttccgggg cgggcggact ctgggcgcct ggtgccggcg
      301 gccgcagcga cagcgccccc gggaagcgca ggaggaagca gggacgattg gaggtgccgc
      361 aggctgagtc gcggccggga tgtccgggca gccgccgccg ccgccgccgc aacagcagcc
      421 gccgccgccg cccgccgccg gggccccggg ctccggagtc gccctgcccg cgcccgcggc
      481 cgctagcgcc ggttcctccc cggccggctc gcctggtgga ggcttggggg ccgcagcggc
      541 cgccctgctg ctccacccgc cgccgccgcc gccgcctccc ccggccaccg ccgcgccgcc
      601 gccccccgcc tcggcggccg cccccgccac cgcgcctccc ggcctggccg tgggcccggg
      661 ctcggtcgca ggcgtcccgg tcccgggcct ggcggcgggc agcagcgccg ctgccccttt
      721 cccgcacggc gactcggccc tcaacgagca agagaaggag ctgcagcggc ggctaaagcg
      781 cctctatccg gccgtggatg agcaggagac gccgctgccc cggtcctgga gcccgaagga
      841 caagttcagc tacatcggcc tctcgcagaa caacctgcgg gtgcactaca aaggtcatgg
      901 taaaaccccc aaagatgcag catctgttcg agccacgcat ccaataccag cagcctgtgg
      961 gatttattat tttgaagtaa aaattgttag taagggaaga gatggctaca tgggaattgg
     1021 tctttctgct caaggtgtga acatgaatag actaccaggt tgggataaac attcatatgg
     1081 ttaccatggg gatgatggac attcattttg ttcttctgga actggacaac cgtatggacc
     1141 aacttttaca actggtgatg tcattggctg ttgtgttaat cttatcaaca atacctgctt
     1201 ttacacgaag aatggacata gtttaggtat tgctttcacc gacttaccgc caaatttgta
     1261 tcctactgtg gggcttcaga cgcctggaga agtggttgat gccaactttg ggcaacatcc
     1321 ttttgtgttt gatatagaag actacatgcg agaatggaga accaaaatac aggcccagat
     1381 agaccgcttt cctatcgggg atcgagaagg agaatggcag accatgatcc aaaaaatggt
     1441 ttcatcttac ttagtccacc atgggtactg tgccacagca gaggcctttg ccagatctac
     1501 agaccagact gttctagaag aattagcttc cattaagaat agacaaagaa ttcagaagtt
     1561 ggtgttagca ggacgaatgg gagaagccat tgaaacaaca caacagttat acccaagttt
     1621 acttgaaaga aatcccaatc tccttttcac attaaaagta cgtcaattta tagaaatggt
     1681 gaatggtaca gatagtgaag tgcggtgttt gggaggccga agtccaaaat ctcaagatag
     1741 ttatcccgtc agtcctcggc cctttagtag tccaagcatg agtcccagtc acggaatgag
     1801 tatccacagc ctagcaccag gcaaaggcag tactgctcat tttcctggtt ttgaaagttg
     1861 tagcaatggt gtaatatcaa ataaagcaca tcaatcatat tgccatagta aacatcagtt
     1921 atccagtttg aatgtaccgg aactaaacag tatcaatgtg tcaagatcac agcaagttaa
     1981 taacttcacc agtaatgatg tagacatgga aacagatcac tactccaatg gagttggaga
     2041 aacttcatcc aatggtttcc taaatggtag ctctaaacat gaccacgaaa tggaagattg
     2101 tgacaccgaa atggaagttg actgcagtca gttaagacgc cagctgtgtg gaggaagtca
     2161 agctgccata gagagaatga ttcactttgg ccgagagcta caagccatga gtgagcagct
     2221 gaggagggaa tgcggcaaga acacagcaaa taagaaaatg ctgaaggacg cattcagctt
     2281 actagcatat tcggatcctt ggaatagtcc agttggaaat caacttgacc caattcagag
     2341 agaacctgtg tgctcagctc ttaacagtgc aatattagaa acccacaatc tgccaaagca
     2401 acctccactg gccctagcaa tgggacaggc cacacagtgt ctgggactga tggctcgagc
     2461 aggagttgga tcctgtgcgt tcgccacagt ggaggactac ctacattagc tgtgcacgtc
     2521 aggagctcac gcttgcatcg tggcaaacag ccaacatgga agtagacggg ctctgctgat
     2581 ctgaaattta catttttaat tatgtactgg ggacaggttt ttgtcgcttt acattgcttc
     2641 ctagtttaca gcatgatgca gatgattttc taacttagtg ttaggagaaa atattttcca
     2701 tcttttaacc tcttagttgt ctaagagtta aatattactg aatttcagac gttcaaattg
     2761 atcatcagaa atcctttaaa acaattacct aaaagaaacc aaaaatcctg ccttctttgt
     2821 tggggggaga agggggaagg aaatggaaca agttgtgttt gtgttagcat gtgggtgatg
     2881 taaactacaa attgggagct gttccgaccc ccgctcctgt gtaagcattc aatcagtgta
     2941 acttgcaaaa tgcataaaca tccgacagtt tgaatttaat agtgttgatg gaagaaatca
     3001 tttttaatgt gtactgtaaa acttgaaata ctcaggagct gagtgagtat gtttgttgct
     3061 acttacaatc ccaacctgtt agtcccagta gttctgtttt aacatggtct ttctcaactt
     3121 tgtttcctgt ttaactacag atgacttctg ttgtagactc acaagtttaa ctgttgtact
     3181 ataacagtat tacatgtcaa cagtgtggtt atgaccttta tttatataaa aaccaaatat
     3241 ttagtcaaat ttaccgtgtc ttaatttaat ctttgtacac cttccatttt taagtgctta
     3301 aatgagtact atattgcaat aaaaatgtag tgatataatt aaccagccat taaaaattta
     3361 cttctacaga
//
