LOCUS       XM_039103541            3342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RAN binding protein 3-like (Ranbp3l),
            transcript variant X1, mRNA.
ACCESSION   XM_039103541
VERSION     XM_039103541.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103541.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3342
                     /gene="Ranbp3l"
                     /note="RAN binding protein 3-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:294789"
                     /db_xref="RGD:1307559"
     CDS             875..2437
                     /gene="Ranbp3l"
                     /codon_start=1
                     /product="ran-binding protein 3-like isoform X1"
                     /protein_id="XP_038959469.1"
                     /db_xref="GeneID:294789"
                     /db_xref="RGD:1307559"
                     /translation="MSTTPRKDDSHLFTSVRPCQLKVQEEQQPQEKYVIAQPIFVFEK
                     GEHNFKRPAEDSLDEAAELEFTGFLRKRVRSSSVTLRTTDSQSLGDLNCSPNNRVPVE
                     LDKRPSSLMTCICNLLLVAALSQARLRSSSFTDVPTFPPSRPVRKNNVFMTSRLLQRN
                     DDMNNVGQGPPVRPSDHVLRPAVLQPSRTQSCQKGGTTLGPGASKTCETKENTEHKIS
                     EADSSLLSENLSNARSSVQMSTDPCISEAPSGGHPKEDECSFTSCSSDFVFGENMVER
                     VLGTQKLTQHPLQNLSYAKEKSFKSLLKFPNVASNSAEPIKNISLIESAAAFSSKPSQ
                     KCLLEKIDVITGEETEHNVLKINCKIFVFNKATQSWSERGQGVLRLNDTAGSECGTLQ
                     SRLIMRNQGSLRLVLNSRLWAQMRTQRASHKSLRITATDLEDDRIKIFLIQASAKDIG
                     FLYAAIHHRLVALRSLGQQGDGGPAGKQADTVLPQVSGGSCDEDEDDITQVTKTGPDP
                     SRWNHRQSIVCL"
ORIGIN      
        1 tcttgcagaa ctctaaatag ttgcttccgc cccataacgg tcctctcagg gagcctccga
       61 gctgtttaca gaatccgaga gttcctgcag tacatttcca tgagctcatg agcagctcca
      121 gctgtacctt ttccatttca catgtgcccg agaatatctg tgctgctcaa gccctgcttt
      181 gggcttgcgc tttaaagaca acgcagcaga aggaaggtgg ttaattaccg tgtcatcagg
      241 acatctttac aatccctgct ttggtcactt cgttaaagca atcagaatgc catttctcgc
      301 ctgcctctct atgctaatca gctagttgag actcctcccc ctccagcctc ccttaagaac
      361 tgtacacatc cagctgtcac aggggcgaac tccaaccagg cagatttaaa ccttgattta
      421 accctgcagc actctcccca tttgcttgta cgattctctg gcagtcctct ctatactaga
      481 gggactgaac gtcctatcag agaaggactt gaaaacggct aaaactgacc aagagagcta
      541 atttcgctga gagacatctt ttctttttgt acgttcttaa aggagaaagt ttcagggcgc
      601 tttggaataa actaagaatt aagtcgtgtt tccagccaaa taagttggca tcttggtaga
      661 caggaggtgc aacactggta aatatttact gcagaaatct taaccaggag aaactctggc
      721 atgttcttcg aggggtaaat attttacatg caaggcaaga tctgcgcgtg cctctgtgtt
      781 ctttccaagt gacttctgaa gaagacagtt ttagatatct ggctgagacg aaatgcgcta
      841 gcggtcccca agccacagcc agatcgttgg tgccatgtct acaacaccaa ggaaagacga
      901 cagccacctg ttcaccagtg tgcgcccttg tcagctgaag gtgcaggagg agcagcaacc
      961 acaagaaaaa tatgtcattg ctcaaccaat atttgttttt gagaaaggag aacacaattt
     1021 taagagacct gcagaagaca gcctggatga agcagcagag cttgaattca ctggcttctt
     1081 gagaaagcgt gtaaggtctt catctgttac gcttcgtact acagattctc agtctctagg
     1141 agatctgaat tgttctccaa acaacagagt tccagtcgaa ctagacaaaa gacccagttc
     1201 cttaatgacc tgcatttgca atctgctttt agtggcagcc ttgtctcagg cgcgcctgag
     1261 gtcctcgtca ttcactgatg tcccaacctt ccctccctcc aggccagtga ggaaaaacaa
     1321 tgtttttatg acatcacgtc tgctgcaaag gaatgatgat atgaacaacg tagggcaagg
     1381 tccccccgtg agaccttcgg accatgttct acgacccgct gttctacagc catctcgaac
     1441 tcagagctgt caaaaaggag gcacaacact tgggcctggt gcatcgaaaa cctgcgaaac
     1501 taaggaaaat accgagcaca agatttctga agcggactct agtttactaa gtgaaaattt
     1561 atcaaatgcc agaagttcag tccagatgtc tactgatcca tgcatctcag aggcaccatc
     1621 aggaggccat ccaaaggaag acgagtgttc atttacaagc tgcagctctg acttcgtttt
     1681 tggagaaaac atggtggaaa gagttttggg cactcaaaag cttacccagc atccacttca
     1741 aaatctttca tatgccaagg aaaaatcatt caaatctctt ttgaagtttc ctaatgttgc
     1801 ttcaaattca gcagaaccta ttaaaaacat atccctaatc gaatcagcag ctgctttttc
     1861 ctccaaacca tcacaaaaat gcttgcttga gaagatcgat gtcataacag gagaagaaac
     1921 agaacataat gtgttaaaga tcaactgcaa gatctttgta ttcaacaaag ccacacagtc
     1981 ctggagtgaa agaggccaag gggttttgag actgaacgac acagccggca gtgagtgcgg
     2041 gacgctgcag tcaagactga tcatgcgcaa ccaaggcagc ctgaggctgg ttctcaatag
     2101 cagactctgg gctcagatga ggactcaaag agcaagtcat aaaagcttgc ggataaccgc
     2161 gactgattta gaagacgacc gcataaaaat attcttaatt caggctagtg ccaaagacat
     2221 aggctttctg tatgcagcaa tacaccaccg tctcgttgcc cttcgaagcc tcggtcagca
     2281 gggtgatggt ggtccagccg gaaaacaggc ggatacagtc ctgccgcagg tcagcggcgg
     2341 gagctgtgat gaggatgagg atgacatcac acaagtcact aaaactggac cagatccttc
     2401 aaggtggaac cacagacagt caattgtctg tttgtaagcc ttctctgcta aaaacgtgac
     2461 atctacagaa agagtagcca ctccactgaa acgccagacc atcctgagaa gactctactc
     2521 ccaccttaaa gagttttttt taattaaaga aacaaacaca gttattgtaa ttaaaagttt
     2581 tatgttttac atttttatta ttgtggacag aatttaagaa atgaacttca gaatttatcc
     2641 ttttgtggat tactctagaa tagtatttgt taattaattt ggactattca tcacattgat
     2701 ggatatatta attaaaagta caaatgttgg ctttgataaa cctttgataa atatctaaag
     2761 tatttatttt aagccataca ttgtctggct atagaacaaa tattttacta aatttacagt
     2821 catctcttta aaaaaatata actgcaaggc atttcattaa atcatatgaa atgtatattt
     2881 tcacttatgc tttgaatctc ctaatacata tgttcaagta agaattcttt tacaagagtg
     2941 tccatttgag gacttttatc cattgcatct tccatatttg actcaaaatc agctcacaag
     3001 agttgataaa taatggaaca aaatgtaatg tattacatat gtgtcacaaa tatacagaag
     3061 gcaaatatca atgtgcttta tttatgtctt aatagtctag tcagtgtaag gctatgcaga
     3121 agccatttta taacaaatgt attgtatatg gccaaatgag tatctcaact cccatcattg
     3181 tcatatgatt tcaatgattt tacagatgtt ttatgccttt ttcatatttt agagattctt
     3241 tatgaatcat gcatgaaaga tccatgtcag aatttagcca tattctattt tattagtagc
     3301 cctaaactat ctcattacag aataaagatt caagatccta aa
//
