LOCUS       NM_001135875            5211 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus RAN binding protein 10 (Ranbp10), mRNA.
ACCESSION   NM_001135875 XM_341676
VERSION     NM_001135875.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5211)
  AUTHORS   Lampert,F., Stafa,D., Goga,A., Soste,M.V., Gilberto,S., Olieric,N.,
            Picotti,P., Stoffel,M. and Peter,M.
  TITLE     The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell
            proliferation and targets the transcription factor Hbp1 for
            degradation
  JOURNAL   Elife 7, e35528 (2018)
   PUBMED   29911972
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5211)
  AUTHORS   Schulze,H., Dose,M., Korpal,M., Meyer,I., Italiano,J.E. Jr. and
            Shivdasani,R.A.
  TITLE     RanBP10 is a cytoplasmic guanine nucleotide exchange factor that
            modulates noncentrosomal microtubules
  JOURNAL   J Biol Chem 283 (20), 14109-14119 (2008)
   PUBMED   18347012
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Oct 16, 2008 this sequence version replaced XM_341676.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.64437.1,
                                           SRR26643298.76164.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-401               JAXUCZ010000019.1  50626159-50626559   c
            402-513             JAXUCZ010000019.1  50625316-50625427   c
            514-566             JAXUCZ010000019.1  50605406-50605458   c
            567-734             JAXUCZ010000019.1  50585471-50585638   c
            735-757             JAXUCZ010000019.1  50580287-50580309   c
            758-942             JAXUCZ010000019.1  50577793-50577977   c
            943-1055            JAXUCZ010000019.1  50573815-50573927   c
            1056-1164           JAXUCZ010000019.1  50572153-50572261   c
            1165-1313           JAXUCZ010000019.1  50571907-50572055   c
            1314-1518           JAXUCZ010000019.1  50571524-50571728   c
            1519-1640           JAXUCZ010000019.1  50570608-50570729   c
            1641-1786           JAXUCZ010000019.1  50570007-50570152   c
            1787-1898           JAXUCZ010000019.1  50569595-50569706   c
            1899-5211           JAXUCZ010000019.1  50565924-50569236   c
FEATURES             Location/Qualifiers
     source          1..5211
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..5211
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /note="RAN binding protein 10"
                     /db_xref="GeneID:361396"
                     /db_xref="RGD:1311587"
     exon            1..401
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..2029
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /codon_start=1
                     /product="ran-binding protein 10"
                     /protein_id="NP_001129347.1"
                     /db_xref="GeneID:361396"
                     /db_xref="RGD:1311587"
                     /translation="MLTAHWLSKADLVALLPAPSDTIAAPSKMAAATADPGAGNPQAG
                     DSSGGDSGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYNYIGLSQGNLR
                     VHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRL
                     PGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLG
                     IAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRTKVQGTVHGFPISA
                     RLGEWQAVLQNMVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGR
                     VGEAIETTQRFYPGLLEHSPNLLFMLKCRQFVEMVNGTDSEVRSLSSRSPKSQDSYPG
                     SPSLSPRHGPSSSHIHNTGADSPSCSNGVASTKNKQNHSKYPAPSSSSSSSSSSSSSS
                     PSSVNYSESNSTDSTKSQPHSSTSNQETSDSEMEMEAEHYPNGVLASVSTRIVNGAYK
                     HDDLQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLVHTEM
                     LQDAFSLLAYSDPWSCPVGHQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQAS
                     ECLRLMARAGLGSCSFARVDDYLH"
     exon            402..513
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            514..566
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            567..734
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            735..757
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            758..942
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1055
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1164
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1165..1313
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1314..1518
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1640
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1786
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1787..1898
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
     exon            1899..5211
                     /gene="Ranbp10"
                     /gene_synonym="RGD1311587"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtagtcca actctagcga agtatagtag tgttcaaaga aaggttgcca ggactcggac
       61 tcagtttccc taccaccctg agatgctcac ggcccattgg ctgagcaagg cagatctggt
      121 tgcactcctc cccgccccca gtgacacaat agcagctccc tccaagatgg cggcggcgac
      181 tgcagacccg ggagctggaa acccgcaggc tggggactcc tccggtgggg actccggggg
      241 cgggctaccg tcacctggag agcaggaact gagtcggcgc ctgcagcgct tgtaccctgc
      301 ggttaatcaa cacgagacgc cgctgccgcg ctcctggagt cccaaggaca agtacaacta
      361 catcggcctc tcccagggaa acctccgtgt ccattacaaa ggtcatggca aaaatcacaa
      421 agatgcagcc tctgtacgag ccacccaccc catcccagca gcctgtggta tttactattt
      481 tgaagtaaag attgtcagca aaggaagaga tgggtacatg ggaattggac tctcagcgca
      541 aggcgttaac atgaacagac tgcctggttg ggacaaacat tcctatggtt accatggcga
      601 tgatgggcat tccttctgct cctcggggac gggccagcct tatggtccca cattcaccac
      661 aggtgatgtg atcggctgtt gtgtcaacct catcaatggc acctgcttct acaccaagaa
      721 tggccacagc cttggtattg ccttcacaga tctcccggcc aacctctacc ccaccgtagg
      781 cctacagaca cctggggaga ttgtggatgc caactttggg cagcagccct tcctgttcga
      841 cattgaggac tatatgcggg agtggcgtac caaagtccag ggcactgtgc acggctttcc
      901 catcagtgcc cggcttggcg agtggcaggc agtgctgcag aacatggtct cgtcttacct
      961 ggtgcatcat gggtattgtg ccacagctac agcttttgcc cgaatgactg aaaccccgat
     1021 tcaggaagag caggcatcca taaagaacag acaaaaaatc cagaagctgg tgctggaagg
     1081 ccgggtgggt gaagccattg agacaaccca gcgcttctac cctgggctgc tggagcacag
     1141 ccccaacctg cttttcatgc tcaagtgtcg acaatttgtg gagatggtga atggcaccga
     1201 cagtgaggtc cgaagcttga gctcccgaag ccccaagtcc caggacagct accctggctc
     1261 ccccagcctc agcccccgac atggccccag tagttcccat atacacaaca caggagcaga
     1321 cagtcccagc tgcagcaatg gcgttgcatc taccaagaac aaacagaacc acagtaaata
     1381 ccccgcaccc agctcctcct cctcgtcctc atcctcctcg tcctcctctt ccccgtcctc
     1441 cgtcaattac tccgagtcca actcaacaga ctctaccaag tcccagcccc acagcagtac
     1501 cagtaaccag gagaccagtg acagcgagat ggagatggag gcagagcact accccaacgg
     1561 cgtgctggcg agtgtctcca cacgcatcgt caatggggcc tataagcacg atgacctgca
     1621 gacagatgag tctagcatgg acgacgggca tccacggcgg cagctctgcg ggggcaacca
     1681 ggctgccaca gaaaggatca tcctgtttgg ccgagagttg caggcattga gtgagcagct
     1741 gggccgagaa tatggcaaga atttggtcca cacagagatg ttgcaggatg cctttagcct
     1801 actagcatac tcagacccct ggagctgccc agttggtcat cagcttgatc ccatccagag
     1861 ggagcctgtg tgtgctgctc tcaacagcgc cattttagag tctcagaacc tgccaaagca
     1921 gcctcctctg atgctcgccc tgggccaggc atctgaatgt ctacggctca tggcccgagc
     1981 aggcctggga tcttgctcct ttgccagagt tgacgactat ttgcactagc agaccttctt
     2041 ggctggctct gtctggccct ccttcagccc tagggctggt gcaaccctgt cctccatagg
     2101 catctggtac agagacctgg aagccatggg cagagtctac tcttcctacc tggccggtcc
     2161 atcctccttc cttccttcct tcctcccttg tcctctcttc cttgtcccct ttcacgtgca
     2221 gcggcctgtg actcagtatt ggctggttac tcatgtagta gcttctcctg taaaggagat
     2281 ttcgttttga ggagaggttg ggttttttgt ttttgttttt gtttttgttt ttttaacttt
     2341 cctcctgact gagccaccag tgtttatctc gggagagttt gtgctgagct ggtttctgct
     2401 aatttagtaa tgaagcctat ccaggttgat gatagcttat tattttcata agtaaaaaaa
     2461 caaacaaatg agattatata tatatatata aatatatatt aaaaaaagac acagtattta
     2521 tcgtagcact agtggtccag cacctcttgg gtgaggctgt ccagacacca tgtgttttta
     2581 tttgagtcca actcattaaa aaagaatcat ctctgtcact tcaatcaagt gatttgttta
     2641 tttcagttta ggttcccctt ttgttgagcc ttaggttcag ctgctgcccc ggaaatttgg
     2701 gttttgggga aggctgcttg gtgggcaagg tcagactaag ctgtttgcag catcccaaga
     2761 ggtgtgggtc tctaggccca ttacagataa acaaaacagc tgcaggttca gggattcagg
     2821 gaagtgaggt ggcccagggg cacacagcaa agcaagggaa cacagggtct gtagccagca
     2881 tgctgtctac cactctaccc tgcctctcac tgcctgcctt gcccctctct cccatctcaa
     2941 tgcttgcctt cccttgttaa gatggccaaa taattcatta ctcagtttat tgcctggaaa
     3001 ctacctgcct tcaacccaag agctgctgtg tgccaggctg ccaagaggaa gccattccca
     3061 agacagaggc ccttaaggac agggctgttt tcttcctttc ggagtcttca ccatcactgc
     3121 ccaactctga tgggattgat gctttctgtg gagaagttgg tacctcaagg aggctgattc
     3181 taggaccact ggtcccagag tggatggaaa ctttgacttc ctggtcctga tctccctaca
     3241 gctaaggaaa gctgctccct tcagcttggc cccagcgact cttaggaagg ggagattcta
     3301 tgggccttac aaatgtccca ccagctgttt cacatggatc ctcacagctg gtggcacaac
     3361 agcaacaaca aaacccacta ttacagggct gagatgctgc caggacatgg gtagaccatc
     3421 tgtggagggg actgtctgcc aaggaagagg agggtctatg cagaggacac ctagatgggc
     3481 caggatttta cctgcttcac agggtgagtg aaaagcctag gcaacctctg caaatattag
     3541 ggtcaactgt ggcaaacgtt tccagtctgt atctgagcag ggtaagcttt tgttctgttg
     3601 gtggacacag aaatcagtgg tagaacctga gatgttctgt gttcaccagg cctcacaagg
     3661 cccacagctg gacaaaattg agttagacca tctgttagta agggactagg gccttgactg
     3721 agatctctca aaattttgct ttaggagcta atcctacagg ctactatgtt ttctcggttc
     3781 ctgtcagggc cttggttagc agctcatcag gaggtcatgt cccgtgtaaa atttcatttg
     3841 tccaaggctg gacccgagct ctaaactcag gttggaaata tcaggctgtt aacaatttac
     3901 aggcctcaca tttggaaatg aaaaccagag gcatttgcag aacagtggaa cttagaaaac
     3961 atctccagca gtcctctcct tttacagtga aagaatcagg tccaggaaat taagtgactt
     4021 gaccaaagcc gcacagcaag tagtggcaga gccaggacta actagttctg tgggttacac
     4081 agtcctgtct agacctaaag caaaatggca aatgagcttt gtaagggttc agcagtgcct
     4141 gagcagctga cacctttagg ggtgtgacaa ggggagggat gggtgctggg acatgggttg
     4201 tggagtggct gagagggcct tggatggctt gggactgctg tgtgctgcac tgggctgtgt
     4261 gtccacctgg ctcacacttg gtacccatgg ccacctcccc attttctgtg ccttatctca
     4321 ctgtttcagc caagtccaag ttgtttactc tgttcctctc cagagaggct ttctgtccta
     4381 gttggaccgc tcactttggg gacataagtc tttgtcccac aagctgtggg gagggccaaa
     4441 atcaagctgc tggagccagt tcttagtcca gtcctgctgc cagaggagac ccatatgcat
     4501 ccccaatcct attagcccgt ttccaggttg gaagcagctt agtaaagggc tggacctgac
     4561 cctggtgtgc aaaaggagga cctggctggg tccagtcctg aggtagcaca tttcctaact
     4621 caccttccct ttgaggcaca gatggtagct ccttgcagat caagggccaa gttggcagat
     4681 gactcagagt cactcctcca tcccttcctc ctagggtctg gggctaggtg cacactggga
     4741 gcagggcttc acacgctaaa gaagtaaggg ttgcctggct acccagcgcc ttcccaggcc
     4801 ttaagcacaa agatgaggca gaggactgtt ggggctgagc gttcctttgg ttgctcacaa
     4861 ctcaggtatg catgtcatta ggcagctgga cagcagagcc cgacttcacc accaaccact
     4921 ggcacttgga cctgtggcca gatggtggct tctggctgtc ccagtgccca cctctgcata
     4981 ggttccctcc atcatcaact acagctgaaa caggcatcct ccacattgtg tacactggtt
     5041 ctgcctttgt ccttgcaaat tgatattcag cattagcatg aaacttgtgg tgtgagaggg
     5101 ttgacagaat tctaacacaa acatcctatt aaattgtact tgagatgaaa aaattcctgt
     5161 tgtattttga cagaattatt tttattaaaa tacacatcca tgagcaattg t
//
