LOCUS       NM_001393770            1509 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RALY RNA binding protein-like (Ralyl), transcript
            variant 1, mRNA.
ACCESSION   NM_001393770 XM_006232126
VERSION     NM_001393770.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Xin,X., Rual,J.F., Hirozane-Kishikawa,T., Hill,D.E., Vidal,M.,
            Boone,C. and Thierry-Mieg,N.
  TITLE     Shifted Transversal Design smart-pooling for high coverage
            interactome mapping
  JOURNAL   Genome Res 19 (7), 1262-1269 (2009)
   PUBMED   19447967
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 10, 2021 this sequence version replaced XM_006232126.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ081768.1, FQ095209.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000002.1  89658335-89658472   c
            139-214             JAXUCZ010000002.1  89571226-89571301   c
            215-247             JAXUCZ010000002.1  89538902-89538934   c
            248-295             JAXUCZ010000002.1  89495913-89495960   c
            296-459             JAXUCZ010000002.1  89478733-89478896   c
            460-573             JAXUCZ010000002.1  89456870-89456983   c
            574-1509            JAXUCZ010000002.1  89390212-89391147   c
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q23"
     gene            1..1509
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /note="RALY RNA binding protein-like"
                     /db_xref="GeneID:294883"
                     /db_xref="RGD:1305844"
     exon            1..138
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..596
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /note="isoform 1 is encoded by transcript variant 1;
                     RNA-binding Raly-like protein"
                     /codon_start=1
                     /product="RNA-binding Raly-like protein isoform 1"
                     /protein_id="NP_001380699.1"
                     /db_xref="GeneID:294883"
                     /db_xref="RGD:1305844"
                     /translation="MTMYRSKRRHQRYINMAGEPKPYRPKPGSKRPLSALYRLESKEP
                     FLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSM
                     KGGSRSSVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAVST
                     DKVI"
     exon            139..214
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     exon            215..247
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     exon            248..295
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     exon            296..459
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     exon            460..573
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
     exon            574..1509
                     /gene="Ralyl"
                     /gene_synonym="RGD1305844"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcgagcaac agcctcactg caaagcagga gcagaacccg tctctttgtc tccgtggtca
       61 aaccaattac ttcttagaaa gtcggcattt ccttttgcag aatgaccatg tacaggagca
      121 aacgcagaca tcagagatat atcaacatgg caggggaacc caaaccatac agaccaaagc
      181 ctggaagtaa gaggcccttg tctgcgcttt acaggcttga atcaaaggag ccattcctgt
      241 ctgttggtgg ttatgtattt gactacgatt actacagaga tgatttctac aatcggctgt
      301 ttgattacca tggccgtgta cctccgcctc ctcgagctgt catcccactt aaacgtccca
      361 gagtggctgt caccaccaca cgcaggggaa aaggtgtctt ttccatgaaa gggggatcca
      421 gatcttctgt tggtgggtca tcttcatcag gctctaagtt gaaatcagat gagttacaga
      481 caatcaagaa agaattaacc cagatcaaaa ctaaaattga ctccttgcta gggcgcctgg
      541 agaagattga gaagcagcaa aaggcagaag cagtttctac agataaagtg atatgaagta
      601 gtgtacacta gtgcaaaaga agaaaagaga aattgtgaca tgcggaaaaa ggagaaagat
      661 ggtttcataa tggacagcaa catctgaaat tcagtttata taaaatcctc agtcatggac
      721 agtgctgttc acttccagaa ataccatttc ttctgtgtcc caagctgtac aattgttgtt
      781 ttatggttta cattgtaaat gtgttttccc tcttgcttat tatgtttttt aagtcttaaa
      841 ttgtgaagga tgttaatgaa tggtgagaga gacactgtat acaaatgtat atttgtaaaa
      901 gctattttta tgattagcat gtgtcattgt tgatcacatt gtcatgtggt gttgcaatcc
      961 tacatttaaa gcttgtttcc aacaatgtca tagggaaaat atacattgta tgctagtttt
     1021 tataatttaa tttcaattta tagtttaaag taccttagac catgagaaaa tctatttgaa
     1081 aagctatatt tctgccctct ataagcacca tgtttattaa taaagaatgc agttatttca
     1141 gaagtgatgc aagagtttaa ggactttggt ttgacctgtg agcatgcttg tctctagtga
     1201 gctgaaatga tccaatcatc acctatttcc tgagtctgag cttctgtgga cagttttcag
     1261 tactcacaga tgagaagtag attgataaga aaaagatttt cttgtccttg gattcaaacg
     1321 tttcagttag tgcacacccc ctccatctga cctcctagtc ctcagaatcc tccatttcca
     1381 agcattgtgt tttccaaatc ctcttggcta ttgtctctcg tgcagtggaa atggaagaga
     1441 ccatccccac agactatagg cacattcagc acataatttc ttaataaata ctggttcttt
     1501 taaaacaaa
//
