LOCUS       XM_039104611            1838 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RALY heterogeneous nuclear
            ribonucleoprotein (Raly), transcript variant X6, mRNA.
ACCESSION   XM_039104611
VERSION     XM_039104611.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104611.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1838
                     /gene="Raly"
                     /note="RALY heterogeneous nuclear ribonucleoprotein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 55 ESTs, 10 long SRA reads, 16 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 22 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
     CDS             584..1471
                     /gene="Raly"
                     /codon_start=1
                     /product="RNA-binding protein Raly isoform X2"
                     /protein_id="XP_038960539.1"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
                     /translation="MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSK
                     YGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLK
                     RAATAIYRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTG
                     SAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGDSSSGGGGG
                     SSSGGGGSGNVGSGGSGGSGSSSSRPPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTH
                     SEEELEHSQDTDAEDGALQ"
ORIGIN      
        1 gggcgggctg gggcctggct ctggcctggg ttggggcccc gggtttcttc cggctttcca
       61 gcccggtcct gctctttggg ttcccttagg cgcgcaaaac tggtcctttc tttttcttca
      121 cgggtctgag cgccttgctc gccacccttg cctatccttc gctcgttgtc ttgtggggcg
      181 cggaagggaa cgaccagccc tcgaactggg gccgcgtctc ccacttcgct ccagtccgag
      241 cctcagtttt catctgggtg aaatggggtc aagaagggac gcggcctctc agggtgttag
      301 ggaattcagg gagggagtta gtacacggca gaagcgttaa atgccaacag gtaacgtttg
      361 gtgagactga cccaggaact tcggaatgta tcgcctaatt aatgtccaca ccggtcttcc
      421 agagttgtcc ctactcacag gagcagaaat cgaggttcag agacgagaaa ccgccgtaga
      481 agtacaaagc tgtgagccct atttctagag acagctgctg ctgaccctgt aacccaaagg
      541 acaaaatagc tggctaaact cattcttggt actggtgcac accatgtcct tgaagattca
      601 gaccagcaat gtaaccaaca agaatgaccc taagtccatc aactctcggg tcttcattgg
      661 aaacctaaac acagctgtag tgaagaagtc agatgtggag accatctttt ccaaatatgg
      721 ccgtgtggct ggctgttctg tgcacaaagg ttatgctttt gtccagtatg ccaatgagcg
      781 ccatgcccga gcagctgtgc tgggagagaa tgggcgggtg ctggctggac agaccctgga
      841 catcaacatg gctggagagc ccaagcctaa tagacccaag gggctaaaga gagcagcaac
      901 tgccatatac aggctgtttg attatcgagg ccgactttct ccagtgcctg tgccccgggc
      961 agttcccgtg aagcgacccc gtgttacagt ccctttggtt cgccgtgtca aaactacaat
     1021 acctgtcaag ctctttgccc gttccacagc tatctctact ggctcagcca agatcaagtt
     1081 aaagagcagt gagctacaga ccatcaaaac ggagctgaca cagatcaagt ccaacattga
     1141 tgcccttttg ggtcgcttgg agcagattgc tgaggaacag aaggccaatc cagatggcaa
     1201 gaagaagggt gacagcagca gtggtggagg agggggcagc agcagtggtg gaggcggcag
     1261 tggcaatgtt ggtagtggcg gcagcggtgg cagtgggagc agcagcagcc ggccaccagc
     1321 accccaagaa gacacagctt ctgaggcagg cacaccccaa ggagaagtcc aaactcgaga
     1381 tgatggtgat gaggagggac tgctcacaca tagcgaggag gagctggagc acagccagga
     1441 cacagatgca gaagatgggg ccttgcagta agcaggagca ttggccatca gcagaagggc
     1501 atcactgtct caggcctcaa gccaggcacc catctctgga tgccagtcta gagagagtac
     1561 cagaggaagg ctggcagcag taacttctct ccccattgca tcccagccag tgagtgctac
     1621 atcctttgca agtggagtta ctggcctacc cttatcccac gcactcttcc tgtctgcact
     1681 gcctgggcca aggggcagaa gcactctgct ctttttttcc caggacattc ccaggcttgg
     1741 ggtttttcta taggtttgaa agtaaagggg gttgtgaagg gcggcacggg gggtagggag
     1801 ggctgacaat aaagagattg gatccaaata cgctctga
//
