LOCUS       XM_008762316            1411 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RALY heterogeneous nuclear
            ribonucleoprotein (Raly), transcript variant X5, mRNA.
ACCESSION   XM_008762316
VERSION     XM_008762316.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 26, 2016 this sequence version replaced XM_008762316.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1411
                     /gene="Raly"
                     /note="RALY heterogeneous nuclear ribonucleoprotein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 54 ESTs, 12 long SRA reads, 16 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 86 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
     CDS             157..1044
                     /gene="Raly"
                     /codon_start=1
                     /product="RNA-binding protein Raly isoform X2"
                     /protein_id="XP_008760538.1"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
                     /translation="MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSK
                     YGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLK
                     RAATAIYRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTG
                     SAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGDSSSGGGGG
                     SSSGGGGSGNVGSGGSGGSGSSSSRPPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTH
                     SEEELEHSQDTDAEDGALQ"
ORIGIN      
        1 ttacagatgg ttgtggacca ccatgtgggt gctggaacag cccagatgtc tgcaagagtt
       61 acaagtgagc cctatttcta gagacagctg ctgctgaccc tgtaacccaa aggacaaaat
      121 agctggctaa actcattctt ggtactggtg cacaccatgt ccttgaagat tcagaccagc
      181 aatgtaacca acaagaatga ccctaagtcc atcaactctc gggtcttcat tggaaaccta
      241 aacacagctg tagtgaagaa gtcagatgtg gagaccatct tttccaaata tggccgtgtg
      301 gctggctgtt ctgtgcacaa aggttatgct tttgtccagt atgccaatga gcgccatgcc
      361 cgagcagctg tgctgggaga gaatgggcgg gtgctggctg gacagaccct ggacatcaac
      421 atggctggag agcccaagcc taatagaccc aaggggctaa agagagcagc aactgccata
      481 tacaggctgt ttgattatcg aggccgactt tctccagtgc ctgtgccccg ggcagttccc
      541 gtgaagcgac cccgtgttac agtccctttg gttcgccgtg tcaaaactac aatacctgtc
      601 aagctctttg cccgttccac agctatctct actggctcag ccaagatcaa gttaaagagc
      661 agtgagctac agaccatcaa aacggagctg acacagatca agtccaacat tgatgccctt
      721 ttgggtcgct tggagcagat tgctgaggaa cagaaggcca atccagatgg caagaagaag
      781 ggtgacagca gcagtggtgg aggagggggc agcagcagtg gtggaggcgg cagtggcaat
      841 gttggtagtg gcggcagcgg tggcagtggg agcagcagca gccggccacc agcaccccaa
      901 gaagacacag cttctgaggc aggcacaccc caaggagaag tccaaactcg agatgatggt
      961 gatgaggagg gactgctcac acatagcgag gaggagctgg agcacagcca ggacacagat
     1021 gcagaagatg gggccttgca gtaagcagga gcattggcca tcagcagaag ggcatcactg
     1081 tctcaggcct caagccaggc acccatctct ggatgccagt ctagagagag taccagagga
     1141 aggctggcag cagtaacttc tctccccatt gcatcccagc cagtgagtgc tacatccttt
     1201 gcaagtggag ttactggcct acccttatcc cacgcactct tcctgtctgc actgcctggg
     1261 ccaaggggca gaagcactct gctctttttt tcccaggaca ttcccaggct tggggttttt
     1321 ctataggttt gaaagtaaag ggggttgtga agggcggcac ggggggtagg gagggctgac
     1381 aataaagaga ttggatccaa atacgctctg a
//
