LOCUS       NM_001011958            1509 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus RALY heterogeneous nuclear ribonucleoprotein
            (Raly), mRNA.
ACCESSION   NM_001011958 XM_215880
VERSION     NM_001011958.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Sallam T, Jones MC, Gilliland T, Zhang L, Wu X, Eskin A, Sandhu J,
            Casero D, Vallim TQ, Hong C, Katz M, Lee R, Whitelegge J and
            Tontonoz P.
  TITLE     Feedback modulation of cholesterol metabolism by the
            lipid-responsive non-coding RNA LeXis
  JOURNAL   Nature 534 (7605), 124-128 (2016)
   PUBMED   27251289
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Todd MA and Picketts DJ.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   3  (bases 1 to 1509)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 1509)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 1509)
  AUTHORS   Jurica MS, Licklider LJ, Gygi SR, Grigorieff N and Moore MJ.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087074.1.
            
            On Feb 11, 2005 this sequence version replaced XM_215880.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087074.1, SRR8487230.62082.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1509
                     /gene="Raly"
                     /note="RALY heterogeneous nuclear ribonucleoprotein"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
     exon            1..68
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            69..151
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            152..416
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..1048
                     /gene="Raly"
                     /note="hnRNP-associated with lethal yellow; RNA binding
                     protein, autoantigenic (hnRNP-associated with lethal
                     yellow homolog)"
                     /codon_start=1
                     /product="RNA-binding protein Raly"
                     /protein_id="NP_001011958.1"
                     /db_xref="GeneID:296301"
                     /db_xref="RGD:1307228"
                     /translation="MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSK
                     YGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLK
                     RAATAIYRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTG
                     SAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGDSSSGGGGG
                     SSSGGGGSGNVGSGGSGGSGSSSSRPPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTH
                     SEEELEHSQDTDAEDGALQ"
     exon            417..489
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            490..656
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            657..770
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            771..1003
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1052
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..1405
                     /gene="Raly"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccgccttcc gagagcagac gcgccgtcgc cttccgtgcc gcgcggcttc ctccagacct
       61 cagcgcgggt gagccctatt tctagagaca gctgctgctg accctgtaac ccaaaggaca
      121 aaatagctgg ctaaactcat tcttggtact ggtgcacacc atgtccttga agattcagac
      181 cagcaatgta accaacaaga atgaccctaa gtccatcaac tctcgggtct tcattggaaa
      241 cctaaacaca gctgtagtga agaagtcaga tgtggagacc atcttttcca aatatggccg
      301 tgtggctggc tgttctgtgc acaaaggtta tgcttttgtc cagtatgcca atgagcgcca
      361 tgcccgagca gctgtgctgg gagagaatgg gcgggtgctg gctggacaga ccctggacat
      421 caacatggct ggagagccca agcctaatag acccaagggg ctaaagagag cagcaactgc
      481 catatacagg ctgtttgatt atcgaggccg actttctcca gtgcctgtgc cccgggcagt
      541 tcccgtgaag cgaccccgtg ttacagtccc tttggttcgc cgtgtcaaaa ctacaatacc
      601 tgtcaagctc tttgcccgtt ccacagctat ctctactggc tcagccaaga tcaagttaaa
      661 gagcagtgag ctacagacca tcaaaacgga gctgacacag atcaagtcca acattgatgc
      721 ccttttgggt cgcttggagc agattgctga ggaacagaag gccaatccag atggcaagaa
      781 gaagggtgac agcagcagtg gtggaggagg gggcagcagc agtggtggag gcggcagtgg
      841 caatgttggt agtggcggca gcggtggcag tgggagcagc agcagccggc caccagcacc
      901 ccaagaagac acagcttctg aggcaggcac accccaagga gaagtccaaa ctcgagatga
      961 tggtgatgag gagggactgc tcacacatag cgaggaggag ctggagcaca gccaggacac
     1021 agatgcagaa gatggggcct tgcagtaagc aggagcattg gccatcagca gaagggcatc
     1081 actgtctcag gcctcaagcc aggcacccat ctctggatgc cagtctagag agagtaccag
     1141 aggaaggctg gcagcagtaa cttctctccc cattgcatcc cagccagtga gtgctacatc
     1201 ctttgcaagt ggagttactg gcctaccctt atcccacgca ctcttcctgt ctgcactgcc
     1261 tgggccaagg ggcagaagca ctctgctctt tttttcccag gacattccca ggcttggggt
     1321 ttttctatag gtttgaaagt aaagggggtt gtgaagggcg gcacgggggg tagggagggc
     1381 tgacaataaa gagattggat ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1501 aaaaaaaaa
//
