LOCUS       XM_039106203           10086 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Ral GEF with PH domain and SH3 binding
            motif 1 (Ralgps1), transcript variant X2, mRNA.
ACCESSION   XM_039106203
VERSION     XM_039106203.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10086
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10086
                     /gene="Ralgps1"
                     /note="Ral GEF with PH domain and SH3 binding motif 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 19 ESTs, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100361774"
                     /db_xref="RGD:2319500"
     CDS             736..2565
                     /gene="Ralgps1"
                     /codon_start=1
                     /product="ras-specific guanine nucleotide-releasing factor
                     RalGPS1 isoform X1"
                     /protein_id="XP_038962131.1"
                     /db_xref="GeneID:100361774"
                     /db_xref="RGD:2319500"
                     /translation="MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDHASKSYDAVVF
                     DVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQVS
                     FWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTW
                     ALLNRKDKTTFEKLDYLMSKEDNYKRTRDYIRSLKMVPSIPYLGIYLLDLIYIDSAYP
                     ASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVE
                     DDNYKLSLRIEPGSSSPRLVSSKEDLAGPSAGSSSARFRRRPTCPDASVAGSLPTPPV
                     PRHRKSHSLGNNLMCQLSVVDSKSATFPSEKARHLLDDSVLESRSPRRGLTHTSSTAI
                     TNGLSLGSSESSEFSEEMSAGLESRGRLYATLGPNWRVPVRNSPRTRSCVYSPTSPCT
                     CTVGSSATVPTMEGPLRRKTLLKEGRKPALPSWTRYWVVLSGSTLLYYGAKSLRGTDR
                     KHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHL
                     DDACKSNRPQVTSSDLACQQKPLDNRSPFFPQSPLGMLPRHLF"
ORIGIN      
        1 aggtaggaat ttaagaggta cactgggtga ggcctggaag gatgtttgta gactgagtct
       61 atttctaggc agggggtggg cgtggcgggc ggctgagccc gatgagagca gcggagcatc
      121 ctagctagcc tgagcgtctg ccagacccaa gcgcaggccg cggccggtgg gggaccgctg
      181 ctgcagcggc tgcgcactgg tgcaaccagt cggttcattt gcgtgtctcc gcccctacga
      241 caagctggtt ggagagtccc ggcagggtgc cgcgcgccga ttggttgagc cggccgccgt
      301 tcaggcccag gagtggacgg ttcctactgc ggctgggcac cggctgggct cccgcgtcgg
      361 ccccgcgttt caagcttgcg cctggctcaa cctcaaccca ggtcggcccg gccccggtct
      421 cagaacgaag gcgccgctgc cgctgggcct ctcgcagggc catgaagaag cggcggcagt
      481 cactgcggcc ctcgtcaagg tgaccagccc ggactacagt gggtccagga ctggaatcct
      541 ctgcacagaa caagggttgg tgaacacttc acttctgaca gatgagggag agcagaggca
      601 ggcactgatg ctgtggccac acaggcttcc tttcccagca cctgtgagaa cccaaggacg
      661 cagctgagga ggacctctca gccaggttat gtcaccagca gaggtggcgc cgaagttccc
      721 tgcggcctgg agactatgta caagaggaat ggtctgatgg ctagcgtgtt ggtcacctct
      781 gccactccac agggcagcag cagctccgac tcactggagg gccagagctg cgaccatgcc
      841 agcaagagct acgatgctgt cgtcttcgac gttctgaaag tgactcctga ggagtttgcc
      901 agtcagatca cattgatgga catccccgtg ttcaaagcca tccagccaga ggaattggcc
      961 agctgcggat ggagtaaaaa ggagaaacac agtcttgccc ccaatgtcgt ggcctttact
     1021 cggaggttca accaggtcag tttttgggtc gtacgagaaa ttctaacagc acagacttta
     1081 aaaataaggg cagaaatcct gagccatttt gtgaaaatag ccaagaaact tctagaactc
     1141 aacaaccttc attctctcat gtctgtggtg tcagcattac aaagtgctcc catcttcagg
     1201 ctgacaaaaa cctgggctct tttaaatcgc aaagacaaga ccactttcga gaaactggac
     1261 tacctgatgt caaaagaaga caactacaag cgaactcggg actacatccg aagtctgaag
     1321 atggtgccca gcattcctta tctaggaatc taccttctgg acttgatcta cattgattct
     1381 gcataccctg cctctggcag catcatggaa aacgaacaaa gatccaacca gatgaacaac
     1441 atcctccgaa tcattgccga tttacaagtt tcctgcagct atgatcacct cactaccctg
     1501 ccacacgtgc aaaagtacct gaagtctgtg cgctacattg aggagctcca gaagtttgta
     1561 gaagacgata attacaagtt gtcactcaga atcgaaccag gaagcagctc tccaagacta
     1621 gtctcttcca aggaagatct tgcaggcccc tctgccggct ccagctcagc caggttccgc
     1681 cggaggccca cctgtccaga tgcatctgtg gccggcagcc tccccacacc gccagtcccc
     1741 agacacagga agagccacag tctgggcaac aatctgatgt gtcagttgag tgtagttgac
     1801 agtaagagtg ccacattccc atcggagaag gccaggcatc tgctggacga cagtgtccta
     1861 gagtcccgca gcccccgcag gggcctcacc cacacctcct ctaccgccat caccaacgga
     1921 ctctccctag gcagtagtga gagctcagag tttagtgaag aaatgtctgc agggctggaa
     1981 agcaggggac gtctttatgc cacgctgggg cctaactggc gggttccagt tcggaattct
     2041 cccagaactc ggagctgtgt ctacagcccc acgagccctt gcacctgtac tgtgggaagc
     2101 tcagccactg tgcccactat ggaggggcct ctgagacgga aaaccctgct caaggaaggc
     2161 cggaagcctg cactgccctc gtggaccagg tactgggttg tactctcagg atccaccctc
     2221 ctttactatg gagccaagtc cttgcggggc acagacagaa aacattataa atctacacct
     2281 ggcaagaagg tctccatcgt aggctggatg gtgcagctgc ctgatgaccc cgagcaccca
     2341 gacatcttcc agctgaataa ccctgacaaa ggcaatgttt acaagttcca gacgggctcc
     2401 cgttttcatg cgatactgtg gcacaagcat ttggatgatg cgtgtaaaag caacaggcct
     2461 caggtaactt cctcagatct tgcatgtcag cagaaacctt tagacaacag gtctcccttt
     2521 ttccctcaga gcccactagg gatgctccca aggcacctgt tctaagattt tcccatgagt
     2581 caaggcaacc cttgcacgaa tgaagcctgg cctagaccac taaaaaaatg caacagacat
     2641 acccattggg gaacagggag gtggcaagtg tgatgtcatc cagtgttcca gctctagcat
     2701 ctatttagtt tgtcccccag agctgatttc atagggaaac tgcaaactga ctaataggtc
     2761 tgtttctctg cccgctacct ggggagtgtc ttagtaatat ataaaatatt tagggacaac
     2821 catgtgccag gcaaggctac tggacctagg tctggtctag cctcttcctc tgctgttccc
     2881 acccccttcc ttgtcaccca tggctttaca tgcagccgtt ggcagagtgt ttctatgtcc
     2941 ctatgttgtg ggttttctta gtgtttccat tgtacacaga ggggcctgag gctcggaagt
     3001 gaaggacacc tgtgcaaggt gccacagtga gtgaatggtg gagctgggac ccaactcagt
     3061 tcacctgatt ctcaacacct tgtagctcct gactgagagt ccctgtcatt gtcccagaca
     3121 gagagccagg agtacagccc ctgacgggca cacctgtcac agaaatggca gcctccatcc
     3181 ttaacacagg tggggttgag tcggagtgtc cttcctgcat gccacacggg cagcactgat
     3241 gccacaagga agcccagagt acactgacct gtgcgcctgc cgtgtgccca ccctgtcctc
     3301 acgaccaaat gtcaaagcac attcactgtg gtgccgtcca tgataggaca ccagaaacct
     3361 ccagcctgcc tgagctccct gagcaacacc agacagctat cagcaagatg gtggcaggcc
     3421 tatggaggtc agaaggcttt ggagtaggca aggatgatct catttctttt aaatacacgt
     3481 gaagatttac tgtatgtatg tgagcacatt catgtaagat ttctacggtg gtacacaaga
     3541 aactataatt gtataatttt agagtgctta cttacctgtg gcatagatga tcagatagac
     3601 agacaaaggc tttttcagtg gtgctggagg ttgacccctg ggcctcaagc atgctgggta
     3661 attagtctgc catagaggta cactcctggc caagcttgct tatagctacc cattacatca
     3721 gtgtcactgc ccatctccca tttgcgccca ctgccatctc agggcaacaa ggagagcaag
     3781 aggctgaagc ttgaacgagg tcgctgctgc ggcaagatgc attaagagga aaacctggat
     3841 cttccattcc agtctcatca gctttgggct tccttccctt ccctgagcta tcagcaaaga
     3901 gaagctcacc agccatacat aggtggcccc aggacctgta tgcaagacgc catgtggttc
     3961 taggtctgcc tggcagcctt gagataggca cctggtgggg ggacaagaca atctcagcca
     4021 ggagcagcaa ggggaggcct gagtgacttc atgttcagga ataacagcag ccagaaagtg
     4081 cagcaaacac atgcagcaga ctggcatgtt gtccaggaga ctcctcagtg ggatttcatg
     4141 cactggccag tacggtatgc catggccagg tcctgtcatg tgtttgtctc cagtgttcag
     4201 acgtagggaa agaaggattg tctttttata ccttggttct tttttttttt tttcggagct
     4261 ggggaccgaa cccagggcct tgtgcttcct aggcaagccc tctaccactg agctaaatcc
     4321 ccaaccccac cttgtttctt ttttatttcc aatttgcttt tcaccaattt gcttttatac
     4381 tgtgatgtat aaaacctggg gacaacctca atactccatg gtagaggctt acttaaatca
     4441 gtcaccgtgc acccgagaga cagctcagga aaggcatgga aaagggcatc acagcggtgt
     4501 ggccttcctc atggaatctg tgatgaagac tggttctatc tgcacgtctt aaacttgttt
     4561 gttctgacac tgaatctact taagcttatt tataatgtgt gtgtaagaaa caaacaacag
     4621 tagagctaga tgtggtaaca ctcaggaggc tgaggcagga agatcatggg gccagcctgg
     4681 gctacataaa caaccaaaga agacaacaaa caaaaacagc agtagagaaa cactatatac
     4741 tcacctcaga cagaacctag aaaccctgac aggtcctgag acctcccctc ccctaagtca
     4801 gtctctccct ccctaactcc cctcctctcc tggtgtgtgt tacttccctg tcttatttta
     4861 ctgtggtcct agggaggaga cccaggcctc agctgctagg caagtgctgc cactgagcta
     4921 tgcccagccc tcattcacag tgtaaaaacc tcacttaaaa cagccatgcc tgtgtgctcc
     4981 ccctgctccc tgctcctctg caccacgtgt ggctacaggg tcactgccac acctctcttc
     5041 tccatcagct ctgcctgtca tctcagaact gagtccctcc ctgttccttg ctcctatgag
     5101 gccatgaacg ttcttggaac tgcatctttc tctgatttct cgttttggtg aaactgacac
     5161 caagatgggt ttttgttttt gtttttgtga aatagtgtct aatcatacca actagaacac
     5221 aaaagtaatg ccaaaggggg aagttcagag ctggggtcta gaggcagctg agggccaggc
     5281 agtgctctgg cagggaactg gcagcctgtg gggaggtttt ggagaagatg atcttcccat
     5341 acttgcacct tcctagccac tctccaccct cccttaagac attccccaca ctctggccta
     5401 gtttcccctc agagacagtc accaccacac cacacagtta gttgtctttg actgagagga
     5461 tggtgctgaa gaatgtgggt tcaggtccca gcactaactc tatgtttggc ctcagtctct
     5521 tcatcttcat tatggtgacc cttctagcat ctgcccaata gagttcatgt gaggactcca
     5581 gaaacagtgc atatgaaaca gtcagagtat tgcctggcac aggcagtcac tccccagtgg
     5641 cagttctcat tgccatgtcc ttccctcccc atacttgtaa ggccctaact gtaggaacta
     5701 ccctaccctt gaccctttct gtggattgaa actttgacaa aagggcgagc tttctcttct
     5761 aggtacccgc aaaccttatg tcatttgaat gagtatctgc aggacttggc gtgacagcaa
     5821 aggcttctga gagcctagac taggtctggc ggaggagggc agctctgggc gtaagctgtg
     5881 ggccaaggca ctggagtctc atagctggac tcgaggaata tggctgtggc ctcacagtcc
     5941 tggatggctc cccagtgtga gatccaccta tcaacccaca gcaactctca tgaatcatcc
     6001 tgcagcagca ccccaccagg tggttgtcag accccaaact gtacacctct ctggaccatc
     6061 atctgttcac cagctgcttc tgcatcaggg gagcatttga cccatgttgg gttctccgtg
     6121 ctttgtgctg cacacagagt agatggtggt aatcttcaag agggctggag agcagagatg
     6181 ggctgctgga caggcttgtt acaccccaag tgcacaggcc actcacccac agggccgcct
     6241 cagattttgt atacccccaa aagcatcctc tgcgtgcgtg cgtgtgtgtg tgtgtgtgtg
     6301 tgtgtgtgtg tgtgtgtgtg agagagagag agagagagag agagagagag agagagagag
     6361 ctctgaaaaa catacatttt ggcacaagac ttgtaacatc acatacttac tggctttgag
     6421 gccctgcttg aagctctagt tacagccttg tcctctaaga aaagtctgaa gggagtccag
     6481 aagctccgtg ttaagggtcc cttgagttct tttactgtaa acaaacgatg ccttaaatcg
     6541 tgtctcgttt tctgttccta tgggtgctat tcatctggac ggcctgttcc ctgggcccca
     6601 ggccctcctg ggtcttgttg tcagcccgcc tgaggcagaa tcatttcagg accgtgtatt
     6661 ggacactggc ctgcttgctc cctgccatga gctttcctgg tgggcctatg gccttccttc
     6721 tctttcccac tcctgccatg ctggtgtggg aatctggggc cttttctccc agcagcttgg
     6781 aggcccccat agtgatcggt ggtcagaagc tatgccaccc cgcattctcc cacaggacag
     6841 aattgtgctc ctgtcttctc acccttgcca ccactgccag ggccggccac actgattcct
     6901 gatcacacag ggagctgagt gacacggagg ccttaagccc cctcagtctt gttctaaatg
     6961 tagtcaccag caagttttcc aagtccaagg gcccagttgt tgatgaccag gtgacaagaa
     7021 agccaaaccc tagggagtga gatgtccagc ctctgcattc atgaaccttt atctgtcacc
     7081 tgttgtcata agtaaggtga ttttcacttt gcacatttta atccaagtgt attgcccctt
     7141 gtcatcacta atgctctctg tccctcttcc tcttcttctt cctcttcctc tttcaatctg
     7201 ggtaccctaa ctctgacaag aaaaaccctc agttttctgg aaaaggctga atttctgggt
     7261 ccctgtaggt atcatattaa ccaatcatga gtctgtccca agaacagtgg agaagctgca
     7321 gacagcacca tgaccatgaa cttgccacca gaaagcactg cattacaaac aaatggtgac
     7381 atggctctaa acatgtggat gacttggtgg gggcaggtag ttgtcaccat ggaggtacgt
     7441 tttggtcaag ccttgccgta ctctgaagct agccttcctg tggtcagagc ctggatattt
     7501 tcatgctgag aggaactcca cgtggtaaag ttgatggcat caaaccttga ccacagctgc
     7561 cttgcacatc cacccacacc aggggtccag gtgtgtgcag cggattcttc caacatcgtt
     7621 ccagctagaa tccagaagat gaaggacagt gtcagacact ccaggcatct ccaagcagaa
     7681 ccatatatgg tcactcttta acctctacca accctgatcc tgcctgctaa ctcctagaaa
     7741 gccagcatgt cagcttctag tttccttgag gcgcctctgc tctggagttc atacatgatc
     7801 agtgtcagac atcaaaagcc ccagaacttc agtcccactc agagaacttt ctgcccttta
     7861 caggtttgtc ttaccagaca caagtgtttt cttccaggcc taatctgaaa gagcacaatc
     7921 acaattattt tccaagtgtt taatctccct aattgaaacc aaattccctc ccctcccaca
     7981 agcatcctta tcatggactc ttgaagacaa ctgcttggac tttattagtg aaaagcctca
     8041 tgggactctt gtgagcctcg aacatggcag gagagccctg tagatggagt taaaagatat
     8101 ttgactctcc aagcagggac ttaggccaag catacaagct cagtgctaat atccccagtg
     8161 ctggcttgtc gcaggggagg tggccaggtc acatgacagg ggcagaggtc ctaggtggat
     8221 tcttagcctg gaaggaaaat gttctgcact tttgctccat tgtccatagc acacatactg
     8281 tgaaactgtt ggtggtcctg ccagttactg ccttgcagac agaccatggc accccaacct
     8341 gagagctgta gaatgccatt tagaaactgg gatgggcagc tggtagtatt atgaagtccc
     8401 aagaaaagcc cactcactta caataggagt aacctctgtc cctctttaat gtacaagttt
     8461 tgtaactcaa agttagccaa gtgtatgctg gcaagcaaga taccttgagg agacttgact
     8521 tggtaggaag cacctgaacc actctcctac ataagccagc aggagagttt ggcccttccc
     8581 ctcccctgac cagacgcccc ggggcatttg ttggaccaag atgctgagca ggtggacaca
     8641 gccgtgtctt gctagcaggc tctctatatt tctccttctt accaagaagg ccagagtctc
     8701 ttccgtcact taactcttgc ctctcaagcc taagaaaggt gtgctggtat tttgtttgtt
     8761 tccttgtttg tttgttacta tcaactttca ggtggaaaat gatctgtaaa actgggaagc
     8821 catttataag ccaagactgc tttcatctgc atgtggggtc cagagctttg caacctctat
     8881 tgaatattgc caaaagcaca gcttctcttc tgtgtgaccc tatgtcatat tgatatgttg
     8941 ggtgatttca tgttataaaa caaaaacaaa aaccccaccc tgcacaaagc tcttttgaaa
     9001 gtgtatttat tgtacaaaca ttcatccata tctctagtga atacttctta ttcaccaggc
     9061 tctacccaga ctgaaatggc tagaaacaag acaaatccaa tgttgacctt tgtagaactt
     9121 accagtcagt gatcaaataa tcaccacctc gcacgccaac tttggcaaga ccctgcctct
     9181 cctctacccc tgaatacaaa tcttgtgcat tggttcctcc aggaagactt cagactgaat
     9241 ggggatgttg ggagagtaag ttgccatgag tactagctgg agtcccaaca ctggaagctg
     9301 tctggctctg aacagccaga tacaggtctt tgttcaagaa tggttacaag gaggacgcca
     9361 aaggtagaat gagagagtag ggtctgagtg cttgcagaat acacaactcc ctcccctccc
     9421 tgtttactct aacttcagtg ttccattcaa atacagtatg agtgggagct gcaagtcctt
     9481 gggagccgag gacttggact ttggtccacc ttgtaacctg ctgctgcaca agtgtgtgtc
     9541 ccgtggacag ccccaaattg ccactcacag cagcaagcca ttttggaagg actgtgacca
     9601 ttcagtaatg aagtaatagt atttattagt gaggtatact ctttaataaa ttttgtgcca
     9661 aaatgcatgt tttcccactt agcattcaaa atgttgtgta gagagtagtt ttcaatttct
     9721 tatgtgttct tccaagtaaa ctggaaataa gttttcacat cttactctac atcttactct
     9781 gtttcttgtt aaatctgcta cacctcccaa gctttttttt cccagcagac cctgcatgca
     9841 gttatgtgag gatttttctc taacatttgt aaattgtctc atctgcaata accatggaac
     9901 atcatccctc cttgggattc tttagatttt tggtgaagta ttttgttacc tcagtcttgt
     9961 atcaagttgc tgtatttttc agcttgttac actgataatt gtttcactaa ttaaatactt
    10021 tcatgtacag acatctttgt ttactttgaa attaaatgtg ttttccaata aatatcgttc
    10081 cattta
//
