LOCUS       XM_039099967            2144 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid induced 2 (Rai2),
            transcript variant X2, mRNA.
ACCESSION   XM_039099967
VERSION     XM_039099967.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2144
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /note="retinoic acid induced 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 24 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:501555"
                     /db_xref="RGD:1560139"
     CDS             357..1796
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /codon_start=1
                     /product="retinoic acid-induced protein 2 isoform X2"
                     /protein_id="XP_038955895.1"
                     /db_xref="GeneID:501555"
                     /db_xref="RGD:1560139"
                     /translation="MDDLQSQNLSMDMTDSPPTLANNRLENGMAQLITTEAWNINSTD
                     LVEGSSAPELNPNGNATYVMTTQGPVQLPVVLEQHVFQHLNSPLVLPQEAPCSSNAIH
                     NNLFQGAEDSEAQPQLLDLRIPSQPQEPTLPFEAVLQNLFPTQGSLGPPPCQPPPGYA
                     PVPPQPFSSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPVPVPQSSESKFSPSFPKPP
                     SSFGLHSFKGTQTTLEKDELKPLDILQPKEYFQLSRHTVIKMGGENEALDLSMKSVPW
                     LKAGEASPPVFQEDAALDLSLAAHRKAEVPPETLYNTSGSADIQGHTLLEKRPSGMEM
                     PFAPAKSREASAMMDSHSSSSNGTEMVSQPIHPGSELKPENNIEIVSESQAAKVIVSV
                     EDAVPAIFCGKIKGLSGVSTKNFSFKREDSVLQGYDINSQEDESLGNTEPLRKPIKNR
                     SIKLKKVNSQEIHMLPIKKQRLATFFPRK"
ORIGIN      
        1 actggccagc ccggccgggg acagtcggga aggcggcgcc agccggtggg gcgggggccc
       61 cgaagtgggt tttgggccgc cacccgctct ggcactgggc ttagagggcg gcacgaagtg
      121 cgctccgtgc ccgggcaccg caccgggctt gtctcggtat ctgccattct gccccagcca
      181 ggaaaaccag gcgccttcca ggcccttcga aagatggatt ctgttgacgt atctggcggc
      241 cctggcgagc tgggtggaaa gttggttttt gccagatcgt gctgggatct tctttgtgcc
      301 gctcagcaag tcccgcatcc cgctggagca gggccacgtg gcaccggagc caagtgatgg
      361 atgacctgca gtcccagaac ctttcaatgg acatgactga ttcccctccc actttggcta
      421 ataacagact ggagaacggc atggcccagc tgataactac cgaggcctgg aacatcaact
      481 ccactgacct ggtggaggga agctctgcgc cagaactcaa ccccaacggc aatgctacct
      541 acgttatgac gacacaaggc cccgtgcagt taccggtggt gttggaacag catgttttcc
      601 agcatctcaa ctcccctcta gtcctgcctc aggaggcccc gtgctcctcc aatgctatcc
      661 acaacaatct cttccagggg gctgaggact ctgaggccca acctcagctc ctggacctga
      721 ggattccaag tcaaccacag gagcctacgt tgccttttga agctgtgctc cagaatttat
      781 tccccaccca aggctctttg ggccctccac cctgccagcc tcctcctggc tatgctccag
      841 tgcctcccca gccctttagc tcccccttgt ctcccctagt cccaccagct accctcttgg
      901 tgccctatcc cgtgattgtc cccttgccag ttccagtgcc cattcccatc cctgtcccag
      961 tgcctcagag ttctgaatct aagttcagcc ccagtttccc caagccacca tcttccttcg
     1021 gcctgcactc ctttaaaggt actcagacca ctctggaaaa ggatgaactg aagcccttag
     1081 acatcctcca gccaaaggag tatttccagc tcagccgcca cacagttatc aagatggggg
     1141 gtgagaatga ggccctggat ctgtccatga agtcagtgcc ctggctcaag gctggggaag
     1201 caagcccccc agtctttcaa gaggacgcgg ccctggatct gtctttggca gcccaccgaa
     1261 aagctgaggt tcctccagag acattgtata acaccagtgg gtcagcagat attcagggtc
     1321 acaccctgct ggagaaacgt cccagtggca tggaaatgcc ctttgccccg gccaagtctc
     1381 gtgaggcctc agccatgatg gatagtcaca gcagcagcag caatggcacc gagatggtca
     1441 gccagcccat ccaccctggc agtgagttaa agcctgaaaa taacattgag atcgtaagtg
     1501 agtctcaggc agccaaggtc attgtgtcag ttgaagacgc tgtgcctgcc atcttctgtg
     1561 gcaagattaa aggcctctca ggggtatcca ccaaaaactt ctccttcaaa agagaagact
     1621 ctgtgcttca gggttatgac atcaacagcc aagaagacga gtccctggga aacaccgagc
     1681 ctcttaggaa acccatcaaa aatcggagca taaagttaaa gaaagtgaac tcccaggaaa
     1741 tacacatgct cccaattaaa aaacaacggc tggccacctt tttcccaaga aagtaaataa
     1801 gggctttaaa acatttttat gattatgatg tggggaaagg tgcattgttt ttttttaaag
     1861 gcatctaaaa caaattatct ttgttaatta ttttggggca taggtgggag cagaaaggca
     1921 aattagctag tatcattttc ttttttaatt tttgactttt cacaaatgag taaataagag
     1981 caacctattt ttcaagcaga ttgcacattt ttttgcagct ttaatggaat attgggtgaa
     2041 tcagaggggt gagagctatt ttcattgcca caaagtgctt tgatgatgta atacctaata
     2101 aagggtagga tgactatttc acaataaatg tttgtttgca ctaa
//
