LOCUS       NM_001109316            2564 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus retinoic acid induced 2 (Rai2), mRNA.
ACCESSION   NM_001109316 XM_001072471 XM_576959
VERSION     NM_001109316.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474014.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_576959.2, XM_001072471.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB692859.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132267
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..2564
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /note="retinoic acid induced 2"
                     /db_xref="GeneID:501555"
                     /db_xref="RGD:1560139"
     exon            1..192
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /inference="alignment:Splign:2.1.0"
     exon            193..2564
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /inference="alignment:Splign:2.1.0"
     CDS             217..1806
                     /gene="Rai2"
                     /gene_synonym="RGD1560139"
                     /codon_start=1
                     /product="retinoic acid-induced protein 2"
                     /protein_id="NP_001102786.1"
                     /db_xref="GeneID:501555"
                     /db_xref="RGD:1560139"
                     /translation="MDDLQSQNLSMDMTDSPPTLANNRLENGMAQLITTEAWNINSTD
                     LVKKALVTVPAPSILNPPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAP
                     ELNPNGNATYVMTTQGPVQLPVVLEQHVFQHLNSPLVLPQEAPCSSNAIHNNLFQGAE
                     DSEAQPQLLDLRIPSQPQEPTLPFEAVLQNLFPTQGSLGPPPCQPPPGYAPVPPQPFS
                     SPLSPLVPPATLLVPYPVIVPLPVPVPIPIPVPVPQSSESKFSPSFPKPPSSFGLHSF
                     KGTQTTLEKDELKPLDILQPKEYFQLSRHTVIKMGGENEALDLSMKSVPWLKAGEASP
                     PVFQEDAALDLSLAAHRKAEVPPETLYNTSGSADIQGHTLLEKRPSGMEMPFAPAKSR
                     EASAMMDSHSSSSNGTEMVSQPIHPGSELKPENNIEIVSESQAAKVIVSVEDAVPAIF
                     CGKIKGLSGVSTKNFSFKREDSVLQGYDINSQEDESLGNTEPLRKPIKNRSIKLKKVN
                     SQEIHMLPIKKQRLATFFPRK"
ORIGIN      
        1 cggacacagg cacacacgcg cacagacaca gtcggcagtg gcggccagcg acagcggctg
       61 ggtgacagca aagacagagg ctcccatcgc tgtgcacccc cttcaggcgc ccagcggcga
      121 ggccagacca agagagttcc cacaccaacg tccaccccgt ggcttcctgg aggcggcagc
      181 ccggatcccg aggccacgtg gcaccggagc caagtgatgg atgacctgca gtcccagaac
      241 ctttcaatgg acatgactga ttcccctccc actttggcta ataacagact ggagaacggc
      301 atggcccagc tgataactac cgaggcctgg aacatcaact ccactgacct ggtaaagaag
      361 gccctggtga ccgtgcctgc cccatcaatt ctgaaccccc cagctgagtc acagagtggc
      421 atggctctga aggtagcagc caccgtgctg cagcccctgt gccttgggga aagcccagtg
      481 gtgatgccca ttcacatgca ggtggaggga agctctgcgc cagaactcaa ccccaacggc
      541 aatgctacct acgttatgac gacacaaggc cccgtgcagt taccggtggt gttggaacag
      601 catgttttcc agcatctcaa ctcccctcta gtcctgcctc aggaggcccc gtgctcctcc
      661 aatgctatcc acaacaatct cttccagggg gctgaggact ctgaggccca acctcagctc
      721 ctggacctga ggattccaag tcaaccacag gagcctacgt tgccttttga agctgtgctc
      781 cagaatttat tccccaccca aggctctttg ggccctccac cctgccagcc tcctcctggc
      841 tatgctccag tgcctcccca gccctttagc tcccccttgt ctcccctagt cccaccagct
      901 accctcttgg tgccctatcc cgtgattgtc cccttgccag ttccagtgcc cattcccatc
      961 cctgtcccag tgcctcagag ttctgaatct aagttcagcc ccagtttccc caagccacca
     1021 tcttccttcg gcctgcactc ctttaaaggt actcagacca ctctggaaaa ggatgaactg
     1081 aagcccttag acatcctcca gccaaaggag tatttccagc tcagccgcca cacagttatc
     1141 aagatggggg gtgagaatga ggccctggat ctgtccatga agtcagtgcc ctggctcaag
     1201 gctggggaag caagcccccc agtctttcaa gaggacgcgg ccctggatct gtctttggca
     1261 gcccaccgaa aagctgaggt tcctccagag acattgtata acaccagtgg gtcagcagat
     1321 attcagggtc acaccctgct ggagaaacgt cccagtggca tggaaatgcc ctttgccccg
     1381 gccaagtctc gtgaggcctc agccatgatg gatagtcaca gcagcagcag caatggcacc
     1441 gagatggtca gccagcccat ccaccctggc agtgagttaa agcctgaaaa taacattgag
     1501 atcgtaagtg agtctcaggc agccaaggtc attgtgtcag ttgaagacgc tgtgcctgcc
     1561 atcttctgtg gcaagattaa aggcctctca ggggtatcca ccaaaaactt ctccttcaaa
     1621 agagaagact ctgtgcttca gggttatgac atcaacagcc aagaagacga gtccctggga
     1681 aacaccgagc ctcttaggaa acccatcaaa aatcggagca taaagttaaa gaaagtgaac
     1741 tcccaggaaa tacacatgct cccaattaaa aaacaacggc tggccacctt tttcccaaga
     1801 aagtaaataa gggctttaaa acatttttat gattatgatg tggggaaagg tgcattgttt
     1861 ttttttaaag gcatctaaaa caaattatct ttgttaatta ttttggggca taggtgggag
     1921 cagaaaggca aattagctag tatcattttc ttttttaatt tttgactttt cacaaatgag
     1981 taaataagag caacctattt ttcaagcaga ttgcacattt ttttgcagct ttaatggaat
     2041 attgggtgaa tcagaggggt gagagctatt ttcattgcca caaagtgctt tgatgatgta
     2101 atacctaata aagggtagga tgactatttc acaataaatg tttgtttgca ctaattggtt
     2161 gcagtattct gtcatttgta aaatttacat ttctcaactg gcgtggttgg cctacacttt
     2221 tgcttgtaaa gagctctaat ttattactat ttagagacct aagctcttca ggcatgttgg
     2281 gaaatactgc cttgcgcctc agaggaggag gattcagggt atgtatggtc tctaacaaat
     2341 cacttttccc tctgggcctt ggttgggttg ctgctgctgc tgctgctgct gctgctgctg
     2401 ctgctgctgc tgctgctgct gctgctgctg ctgcttttat ctcaatgtgg caaaggccca
     2461 gggagggggc agaaatgtga gtctcaagta ctcaaggcct ctctcaggtc actcagttct
     2521 tgactgtgtt tagttttttt ttttttcttg gacttctcca tgct
//
