LOCUS       NM_001399209            4726 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus retinoic acid induced 14 (Rai14), transcript
            variant 1, mRNA.
ACCESSION   NM_001399209 XM_006232061
VERSION     NM_001399209.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4726)
  AUTHORS   Qian,X., Mruk,D.D. and Cheng,C.Y.
  TITLE     Rai14 (retinoic acid induced protein 14) is involved in regulating
            f-actin dynamics at the ectoplasmic specialization in the rat
            testis*
  JOURNAL   PLoS One 8 (4), e60656 (2013)
   PUBMED   23565266
  REMARK    GeneRIF: Rai14 is involved in the re-organization of actin
            filaments in Sertoli cells during the epithelial cycle,
            participating in conferring spermatid polarity and cell adhesion in
            the testis.
REFERENCE   2  (bases 1 to 4726)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006232061.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.8758.1,
                                           SRR26643294.8158.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                JAXUCZ010000002.1  61408986-61409053   c
            69-150              JAXUCZ010000002.1  61384275-61384356   c
            151-281             JAXUCZ010000002.1  61328007-61328137   c
            282-370             JAXUCZ010000002.1  61307786-61307874   c
            371-435             JAXUCZ010000002.1  61298587-61298651   c
            436-493             JAXUCZ010000002.1  61295252-61295309   c
            494-564             JAXUCZ010000002.1  61294441-61294511   c
            565-671             JAXUCZ010000002.1  61292328-61292434   c
            672-850             JAXUCZ010000002.1  61291426-61291604   c
            851-879             JAXUCZ010000002.1  61290910-61290938   c
            880-966             JAXUCZ010000002.1  61289772-61289858   c
            967-1053            JAXUCZ010000002.1  61288664-61288750   c
            1054-1108           JAXUCZ010000002.1  61285521-61285575   c
            1109-1227           JAXUCZ010000002.1  61282373-61282491   c
            1228-2757           JAXUCZ010000002.1  61278404-61279933   c
            2758-2907           JAXUCZ010000002.1  61276664-61276813   c
            2908-2973           JAXUCZ010000002.1  61275899-61275964   c
            2974-4726           JAXUCZ010000002.1  61273439-61275191   c
FEATURES             Location/Qualifiers
     source          1..4726
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..4726
                     /gene="Rai14"
                     /note="retinoic acid induced 14"
                     /db_xref="GeneID:294804"
                     /db_xref="RGD:1305942"
     exon            1..68
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            69..150
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..3051
                     /gene="Rai14"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankycorbin; retinoic acid-induced protein 14; ankyrin
                     repeat and coiled-coil structure-containing protein"
                     /codon_start=1
                     /product="ankycorbin isoform 1"
                     /protein_id="NP_001386138.1"
                     /db_xref="GeneID:294804"
                     /db_xref="RGD:1305942"
                     /translation="MKSLKAKFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGA
                     SATKHDSEGKTAFHLAAAKGHVECLKVMVTHGVDVTAQDSSGHSALHIAAKNGHPEYI
                     KKLLQYKSPAESVDNLGKTALHYAAAQGSLQAVQVLCEHKSPINLKDLDGNIPLLVAI
                     QNGHSEACHFLLDHGADVNSRDKNGRTALMLACETGSANTVEALIKKGADLNLVDSLG
                     HNALYYSKLSENAGIQSLLLSKISQDADLKTPTKAKQHDQVSKISSERSGTPKKRKAP
                     PPPISPTQLSDVSSPRSITSTPLSGKESVFFAEAPFKAEISSIQENKDRLSDSTAGAD
                     SLLDVSSEADQQDLLVLLQAKVASLTLHNKELQDKLQAKSPKETEADLSFQSFHSTQT
                     DLAPSPSKSSDIPSSDAKSSPPVEHPAGTSTADRDVIIQQLQDTLHDLQKRLETSEAE
                     KKQLQDELQSQRTDTTCLNNTEISENGSDLSQKLKDTQSKYEEAMKEVLSVQKQMKLG
                     LLSHESADGDSRLREVRVTDEDVDALKQDLQRALEESKRDKARVQELETKLVEKEKAE
                     ATKPSSEVCEEMRNSYCSVIENMNKEKAFLFEKYQQAQEEIMKLKDTLKSQMPQEAPD
                     DSGDMKETMNRMVDELNKQVSELSQLYREAQAELEDYRKRKSLEDATEYIHRAEHERL
                     MHLSNLSRTKAEESLSDMRSQYSKVLNELTQLKQLVDAHKENSVSITEHLEVITTLRT
                     MAKEMEEKTVTLQEHLASKEGEVAKLEKQLAEEKAAMSDAMVPKASYEKLQASLESEV
                     NALAAKLKESVKEKEKAHSEVAQVRSEVSQAKREKENIQTLLKSKEQEVTELVQKFQR
                     AQEELAGLKRCSETSSKLEEDKDEKINEMTKEVLKLKEALNSLSQLSYSTSSSKRQTQ
                     QLEMLQQQVKQLQNQLAECKKQHQEVVSVYRMHLLYAVQGQMDEDVQKVLKQILTMCK
                     NQSQKK"
     exon            151..281
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            282..370
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            371..435
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            436..493
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            494..564
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            565..671
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            672..850
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            851..879
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            880..966
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1053
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            1054..1108
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1227
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..2757
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            2758..2907
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            2908..2973
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
     exon            2974..4726
                     /gene="Rai14"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctttcctgg ggaagcggcg ggcgggacgg ccagccgggc ccggagctga ggcagccgct
       61 tggatggggt attgacaaat ctcctaggac tttggaaggc tgaatggact aaacatgaag
      121 agcctgaaag cgaagtttag gaagagcgac acgaacgagt ggaacaagaa tgatgaccgc
      181 ctgctgcagg ctgtggagaa tggagatgct gagaaggtgg cctcactgct gggcaagaaa
      241 ggggccagtg ccaccaagca tgacagcgag ggcaagaccg ctttccacct tgctgctgca
      301 aaaggacacg tggaatgcct caaggtcatg gttacacacg gtgtggatgt gactgcccaa
      361 gactcttccg gtcacagtgc tttacatatc gcagccaaga atggccaccc agagtacatc
      421 aagaagcttc ttcagtacaa gagcccagcc gaaagtgttg acaacttggg gaaaacagct
      481 ttgcattatg cagcggcaca ggggagcctt caagctgtac aagtcctctg cgaacacaag
      541 agccccataa acctcaaaga cttggatggg aacatacccc tgctcgtcgc aatacaaaat
      601 ggccacagtg aggcctgcca ctttctcctg gaccatggcg cagatgtcaa ttccagggac
      661 aaaaatggaa gaactgctct catgctggcg tgcgaaactg gcagtgctaa cactgtggaa
      721 gccttaatta aaaagggggc agacctgaac cttgtagatt ctcttggaca caatgcctta
      781 tattattcca aactctcaga aaatgcagga attcagagcc ttctattatc aaaaatctct
      841 caggatgctg atttaaagac cccaacaaaa gcaaagcagc atgaccaagt ctctaaaata
      901 agctcagaaa gaagtggaac tccaaaaaaa cgcaaagctc caccacctcc tatcagtcct
      961 acccagttga gtgatgtgtc ttccccacga tcaataactt ctacaccact ttcaggaaag
     1021 gaatcagtat tttttgctga agcacccttt aaggctgaga tcagctccat acaagaaaac
     1081 aaagacaggc tgagcgacag tactgcaggt gctgacagct tattagatgt aagttctgaa
     1141 gctgaccaac aagatcttct tgtcctattg caagcaaaag tcgcttccct taccttacac
     1201 aataaggagt tacaagataa attgcaggcc aaatcaccca aggaaactga agccgaccta
     1261 agctttcagt ctttccattc cacccagact gacctagccc catccccgag caaatctagt
     1321 gacatccctt cctccgatgc caaatcatcc ccgcctgttg aacatccggc ggggacatcc
     1381 accgctgaca gggatgtcat aatccagcag ctacaagata ccttgcatga tttgcagaag
     1441 agattggaga cctctgaagc agagaagaaa cagctccagg acgaactcca gtcacaaagg
     1501 acagacacga catgcttgaa caacacagag atttccgaaa atggctccga cctcagtcag
     1561 aaactcaaag acactcagag caagtacgaa gaggccatga aagaagtcct gagcgtgcag
     1621 aagcagatga agctgggtct cctctcccac gagagtgccg atggcgactc gcgtctccga
     1681 gaggtgaggg tcactgatga agacgttgac gcactaaagc aagacctgca gagagcactg
     1741 gaagagagta aaagggacaa ggcacgggtg caggagttag agacaaagct cgtggagaaa
     1801 gaaaaggctg aagcgactaa gccgtcctca gaggtgtgcg aggagatgag aaactcctac
     1861 tgctctgtca tcgagaatat gaataaggag aaggcatttt tgtttgagaa ataccagcag
     1921 gcccaagaag aaatcatgaa actaaaggac acactaaaaa gtcagatgcc acaggaagcc
     1981 cccgatgact ctggggacat gaaagagacc atgaacagga tggttgacga gctcaataag
     2041 caggtgagcg agctgtcaca gctctacaga gaagcccagg cagagctgga ggattacagg
     2101 aagaggaagt ctctagaaga cgcaaccgaa tacattcaca gagcggaaca cgagaggctg
     2161 atgcacctgt caaacctgtc caggaccaaa gcggaagaat cgctgtccga catgaggtct
     2221 caatattcca aggtgctgaa cgagttgact cagctcaagc agctggtgga tgcgcacaaa
     2281 gagaactccg tgtccatcac agagcatctg gaagtaataa ccacgctgcg gacgatggcc
     2341 aaagagatgg aagagaaaac agtcaccctc caagagcacc tcgcaagcaa ggaaggggaa
     2401 gtcgcaaagc tggagaagca gctcgcagag gagaaagccg ccatgagcga cgcaatggtc
     2461 cccaaggctt cctacgagaa gctccaggcc tccctggaga gcgaagtcaa cgcgttggca
     2521 gcaaagttaa aggagtcggt gaaagagaaa gagaaagccc attctgaggt cgcccaggtt
     2581 cgaagtgagg tctcgcaggc gaaaagggaa aaggaaaaca tccagactct cttgaaatcc
     2641 aaagagcagg aagtaactga acttgtgcag aaattccagc gagctcagga agaactggcc
     2701 gggttgaaaa gatgctctga gacctcgtcg aagctggagg aggacaaaga cgaaaagata
     2761 aatgaaatga ccaaggaggt cctgaagctg aaggaggccc tgaacagcct ctcgcagctc
     2821 tcatactcca caagctcgtc caagaggcag acccagcaac tggaaatgct acagcagcag
     2881 gtcaagcagc tgcagaacca gctggctgaa tgtaagaaac aacaccagga ggtcgtatcc
     2941 gtttacagaa tgcatcttct atatgctgta cagggccaaa tggatgaaga tgtccagaaa
     3001 gtcttgaagc agatcctcac catgtgtaaa aaccagtctc agaagaagta aaacagattc
     3061 attggcaagg cactgcccct tgttgcctct ctttctgtta aatctggagt tgtcactgac
     3121 cactgccgtt cttatccatg gtgtgcactg tgacctagca tagcttcttt tccagaagat
     3181 gccctcttca gaactgcata ggtactccag accagcaggg gtgaaaggcc ctgctctttc
     3241 ttcagaatct agaactggga tcagccacac ccaaaagtct ggtctacctt ctttggtacc
     3301 tgaccatagg agaggcttca ctgatctgct gaggccttgg tgcagtgagt ggtccttgat
     3361 ccctgccttt ggactgtgcc attcagcaca ggagagcatt ttgccttcca tttcctaaac
     3421 atggtttaat tcctaaccaa actaaaatga cactacaagt gagtgcttaa gaccctttat
     3481 cctgtggatt taaaaactct actctgtccc cccagctgcc ttaaatctca ccaccctgct
     3541 tatagtctca cagtttggtg agtgccgtta actaaaacac aaagttttaa gtccagagtg
     3601 aactctccct taacagtttt taagtaaatc aacacattgt agattttcta tgcaaacttg
     3661 cctagaaaac tttccacaat gctcaggaag cccagatatt tttatttcaa cagaggacag
     3721 taaactgtgt gtttacagcc aaaagacatg cctcacggtt cttaacctcg atttttaaaa
     3781 agtgttttgt ttcctctatg atatttttat tggcttttaa agatgttttc atagctaaag
     3841 ccctaagtga gattagatga tattaacatt atttttagat gaacatactt aagacttctt
     3901 aaaaatgtaa ctttttcctc aaaagtcttc agccatagat cgcacagggt agttaaatat
     3961 tccactcagt gtgagctgct cagtacccct cggactttct gtagtctatt tctgagtgta
     4021 gtaaatcctc ctcttgcccg ttgaatttgt aaacgcccca aactctcgcc catgagtcgt
     4081 tcctgaaagg actgtcagtt ccagtcagct tctccatgtt gaaagtaaga gcctcaacat
     4141 gccagcatgg tgcatagcaa agcctggggg aattaggcct gttgactttc ctttcaggtt
     4201 acaaaggttt gacctacttg cagcttctct ttatggcccc gatgatgaaa taaagaactt
     4261 ctggtgtgtt actaaaagta gagtccactc tgacagggcc catcgactgc agggctgcct
     4321 cggctctgag gccacttggc tgacttgggt gtgttcatct gtcttaggtg atggtcaata
     4381 ccagcaggac taaagtggca atacttttca taagttgccc gatcacggtt aagcatttct
     4441 caaaatgccc ccaaagaaat gtgaaaggat ttgccacgca cggaacctaa gaaatgacca
     4501 agccacctcc ccttgtgcct ccacacggaa atgctgcagt gtgtaaactt gagacatttt
     4561 gtaggatgcc tgacgaagtg tagcctttct tcttgtgtca ggatgcatat ttattacaag
     4621 tattctggtt aaatattgag aagttatatg ctgtagttta gctttttttt gtctttgtaa
     4681 taatttacag aaattattgc gggaaataaa catggttcat tttgca
//
