LOCUS       XM_006227600            1120 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid early transcript 1E
            (Raet1e), mRNA.
ACCESSION   XM_006227600
VERSION     XM_006227600.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006227600.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1120
                     /gene="Raet1e"
                     /note="retinoic acid early transcript 1E; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:292450"
                     /db_xref="RGD:1311118"
     CDS             470..1120
                     /gene="Raet1e"
                     /codon_start=1
                     /product="retinoic acid early-inducible protein 1-beta"
                     /protein_id="XP_006227662.2"
                     /db_xref="GeneID:292450"
                     /db_xref="RGD:1311118"
                     /translation="MCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGH
                     CSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHT
                     TKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDD
                     ETLMKHLNLSIVECSQKFNEFLNQHEERTRSRTRAPDITQPPPTSQVPYKELLIPV"
ORIGIN      
        1 gtcagtggtt gaccaatggt tttacgatag ttattaccta aaaagacacg agttggggtt
       61 ggggatttag ctcagtggta gagtgcttgc ctagcaagca caaggccctg ggttcggtcc
      121 ccagctccga aaaaagaaaa aaaaagacac gagttgtctc tctcttatcc aaatacaaac
      181 attaaaatgc ccagagagaa ggctaggtaa tatctcgtac gtagtactga aatttcccat
      241 atgcccctca gaaatactgt ctttagcaaa ctcactagct atgtctgagg gaacagtgtc
      301 tatttgtttc acgtgtatat atacatatgt gtgtgtttgt tcatatatgt atgcagacta
      361 cacatttcct tttggcatca ctcaggatgt ggagcctggt gggcctcttg aatagagtca
      421 cctcttcctg acctttgccc ttcagaagaa tgcttggggt cacaggaaca tgtgttctat
      481 ggctttgtgc tcccaatttg gaactcacct tcatgtttct ctcacagatg cacactctct
      541 tagttgcaac ttgatcatca ggtctcctac caaagcagaa cctctccggt atgaaggaca
      601 ctgttcaatg gatgaaattg ttttcctttc ttttaataac gtgaacaaga ccatgccttt
      661 gggtaaccag gagaagatgg caaatgccac caaagtgcag aaatgtttga cccagtggat
      721 agacctattg ggccaggact taagggacaa agtgtctgaa atcaaagtgc acactaccaa
      781 gaccagtggt caccccactt tacgggtcac catgctttct aagcacagac acggagaaat
      841 cattggtgct tcctgggaat tcaacatcag tgagaattat tccttcatct tggacctaaa
      901 gactatgaag tggaaaccac aggacatcat gaaagaatgg aaagatgatg agacattaat
      961 gaaacatctg aatttgtcca tagtagaatg cagtcagaaa ttcaatgaat tcttaaatca
     1021 gcatgaggaa agaacaagat caagaacaag ggccccagat atcacccagc ctccacctac
     1081 cagccaggtt ccttataagg aattattgat ccccgtgtga
//
