LOCUS       XM_017589819            1368 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid early transcript gamma
            (Raet1c), mRNA.
ACCESSION   XM_017589819
VERSION     XM_017589819.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589819.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589819.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1368
                     /gene="Raet1c"
                     /note="retinoic acid early transcript gamma; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 72% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:292458"
                     /db_xref="RGD:1308344"
     CDS             1..954
                     /gene="Raet1c"
                     /codon_start=1
                     /product="retinoic acid early-inducible protein 1-gamma"
                     /protein_id="XP_017445308.1"
                     /db_xref="GeneID:292458"
                     /db_xref="RGD:1308344"
                     /translation="MAKRGTTKCNLSLSLGLLLLLNFLGTAMLEDVHSFSCNLIIRAP
                     TKAEPLWYEGQCSVDGIDFLSSNNVNKTMPLGNQEKMANATEVWTCEIQWLDLLGQDL
                     RDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGQIISASWEFNISENYSFILDLKNMKWI
                     PEDIMKEWKDDATLMKHLNLFIVECSPKFNEFLNQHEERTRSTTRAPDITQPPPTRQF
                     PYKEVLIPVVLIIFIIFICICVKRMCCPQGGRELQLLKDYCINFHKPQRNEGLEETRG
                     EVPNQRTKILSQEEDPKTLGGPRRASDPVELELHMVLSTGS"
ORIGIN      
        1 atggcaaaga gaggaaccac caagtgcaat ctttctctga gtctgggcct tttgctgctg
       61 ctgaattttc tggggaccgc gatgctagaa gatgtacact cctttagttg caacttgatc
      121 atcagggctc ctaccaaagc agaacctctc tggtatgaag gacagtgctc agtggatgga
      181 attgatttcc tttcttctaa taacgtgaac aagaccatgc ctttgggcaa ccaggagaag
      241 atggcaaatg ccaccgaagt gtggacatgt gagatccagt ggctagacct attgggccag
      301 gacttaaggg acaaggtgtc tgaaatcaaa gtgcacacaa ccaagaccag tggtcacccc
      361 actttacggg tcaccatgct ttctaagcac agacacggac aaatcattag tgcttcctgg
      421 gaattcaaca tcagtgagaa ttattccttc atcttggacc taaagaatat gaaatggata
      481 ccagaggaca tcatgaaaga atggaaagat gatgcgacat taatgaaaca tctgaatttg
      541 ttcatagtag aatgcagtcc gaaattcaat gaattcttaa atcagcatga ggaaagaaca
      601 agatcaacaa caagggcccc agatatcacc cagcctccac ctaccaggca gtttccttat
      661 aaggaagtat tgatccctgt ggttctcatc atctttatta ttttcatttg catatgtgtg
      721 aagaggatgt gttgtcccca aggaggtaga gaacttcagc tgctcaagga ctactgcatc
      781 aacttccaca agccacagag gaatgagggg ctagaggaga caagaggaga ggttcccaac
      841 cagagaacca aaattttgtc ccaggaggaa gatcccaaga cattgggagg ccccaggagg
      901 gcatcggatc ctgtggaact ggagttacac atggttttga gtactgggag ctgaacgcag
      961 aacctctcca agaacagcaa gggaacttct gagccttctc tcaaaccctc gaatattttt
     1021 ttccttaaaa gatttttatt ttgtttatgt atatgagtac actgtctctg tcttcacaca
     1081 caccaaaggt gggaatcaga tcccatcaca gatcgctctg agccactatg tgttgctgag
     1141 agttgaactc aggacctctg gaagagtgag cagttctctt aaccgcccag ccatctcttc
     1201 agattaataa atttctgaaa aagaaaatat ggcctaaata ttattaaata taggggaagg
     1261 ccttaaccaa acttcacgat aaagttgaat gtttcagatt cattcactgt aaagtgatca
     1321 tggagtgtaa tggccagtta tgacgtcatt tgtagcattg gagcataa
//
