LOCUS       NM_001127377            3848 bp    mRNA    linear   ROD 17-FEB-2024
DEFINITION  Rattus norvegicus RPA1 related single stranded DNA binding protein,
            X-linked (Radx), mRNA.
ACCESSION   NM_001127377 XM_001055039 XM_001055092 XM_001058214 XM_577067
VERSION     NM_001127377.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3848)
  AUTHORS   Dungrawala,H., Bhat,K.P., Le Meur,R., Chazin,W.J., Ding,X.,
            Sharan,S.K., Wessel,S.R., Sathe,A.A., Zhao,R. and Cortez,D.
  TITLE     RADX Promotes Genome Stability and Modulates Chemosensitivity by
            Regulating RAD51 at Replication Forks
  JOURNAL   Mol Cell 67 (3), 374-386 (2017)
   PUBMED   28735897
REFERENCE   2  (bases 1 to 3848)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000448.1.
            
            [WARNING] On Mar 27, 2024 this sequence was replaced by
            NM_001127377.3.
            
            On Nov 27, 2020 this sequence version replaced NM_001127377.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166523.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-759               JACYVU010000448.1  451925-452683
            760-902             JACYVU010000448.1  465319-465461
            903-1095            JACYVU010000448.1  467907-468099
            1096-1204           JACYVU010000448.1  476713-476821
            1205-1296           JACYVU010000448.1  477024-477115
            1297-1419           JACYVU010000448.1  477217-477339
            1420-1524           JACYVU010000448.1  488647-488751
            1525-1686           JACYVU010000448.1  490723-490884
            1687-1847           JACYVU010000448.1  491850-492010
            1848-2008           JACYVU010000448.1  492808-492968
            2009-2070           JACYVU010000448.1  508886-508947
            2071-2361           JACYVU010000448.1  527824-528114
            2362-2529           JACYVU010000448.1  529736-529903
            2530-3848           JACYVU010000448.1  538163-539481
FEATURES             Location/Qualifiers
     source          1..3848
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..3848
                     /gene="Radx"
                     /note="RPA1 related single stranded DNA binding protein,
                     X-linked"
                     /db_xref="GeneID:680663"
                     /db_xref="RGD:1589413"
     exon            1..759
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..2651
                     /gene="Radx"
                     /note="uncharacterized protein CXorf57 homolog"
                     /codon_start=1
                     /product="RPA-related protein RADX"
                     /protein_id="NP_001120849.1"
                     /db_xref="GeneID:680663"
                     /db_xref="RGD:1589413"
                     /translation="MSGESDQPQPGPSHAGLYLEHRERDQAGVPGGVIRRAGSQRHRS
                     WIQTVIEQITGSPRQCVTLSEVVPVSVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDG
                     VYQEKCYLDPSLNFLVYQNILKVGIEMRISRVSCLYNEKRLGQGILCIDKVHCGEPLD
                     VISVETPFRNRAHEEKPERPLRGSKSHYLALWNNEDPYGDIWKTNKQPEEFNFNNTKI
                     ISLSHLEMTWHNRKNFPALLVRILHKSKLRYYGKPNKKMIEPYQTYLEVADSSGMVSV
                     IMWNALCPEWYKSLRVGLILLLQDYSVKKSYPLRIQPDPVDPQMKLISTMEICLNLRD
                     PPTNIVIIPEKQLKSEWKLPKLINRFITRSELDDMPENSICDVIGMLSFVGRVQRSKK
                     KENSEDFWSYRWIHITDGTSEQPFIVQLFSTSQPEVFENIYPMTYFVCTQLKVVRNNS
                     QVPKLLYLTTTNESRVLITGHRGQPYTYDTKAKKIIQWIKTKTNLEAKNTVIGGYYPY
                     PPVPETFSKYSRFIKAESLLTTISEVRKVIEDLQYREQKRIAIQGIITAIKYIPYNHS
                     AKSAPASETLQNASPPSTSQAAAKEGHYHERGSKRSQDDRPMDSLPMVLSLCAKRKIL
                     QGPTANPVPVPQPHSSAQMKGNKPNIPSRENSTANATGKSKRIINDRWESQLWRDKKF
                     SLRDHLHYGHVDPESIPRKFILGHEKFLTQQFNSQPAKYVPPEGKPPKLDEFQSARSL
                     GHFEVTILGLNHEIAIDVAFLPMYSPEDVETSQIDTFLTCMNYSCVYPPAAPVSGRVP
                     DPKAVAGDIVKAAADLDRVHIIGILDICNLGNNKVEVCLQKIYTPE"
     exon            760..902
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1095
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1204
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1296
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1419
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1524
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..1686
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1847
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..2008
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2070
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            2071..2361
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            2362..2529
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
     exon            2530..3848
                     /gene="Radx"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaccagacca gtccgtgcca acagcgttgc gcttcagtct ggagcttctt ttctccgggt
       61 ttttgagtaa ggcaaataag ctttttggag tgcaaggagt tcgcggttat ctcacaatgt
      121 cgggtgagtc ggatcagcct cagccaggac cctcacacgc tggtctctac ttggagcacc
      181 gcgaaagaga tcaggctggg gtcccaggag gagtgatccg aagagctggt agccaaaggc
      241 acaggtcctg gatccaaact gttattgagc aaataactgg ctcccctaga cagtgtgtta
      301 ccctctcgga agtggtacct gtctctgtgc tggccgtcca aagatacctt ttagaggatg
      361 agccacggga tacagtgccc aagcctcccc tttactgcta tgatgtgaca atctcagacg
      421 gggtgtacca ggagaagtgc tacttagacc ccagcttaaa ctttctcgtt tatcagaata
      481 ttcttaaagt tggcatagaa atgagaattt ccagagtctc gtgcctttac aatgagaaaa
      541 gattgggcca ggggatcctg tgcatagata aggtccactg tggggagccc ctagatgtca
      601 tttctgtaga aactccattt agaaacagag cccatgaaga aaagccagag cggcctctaa
      661 gagggagcaa gagtcattac ctggctctat ggaataacga agatccatac ggagatatat
      721 ggaagaccaa caagcaacct gaggagttca attttaacaa caccaaaata atctctctct
      781 ctcatcttga aatgacctgg cataacagaa aaaattttcc tgccttgctc gtaaggatcc
      841 tgcataagtc aaaactgcga tactatggaa aacctaataa aaagatgatt gagccatatc
      901 agacctattt ggaggttgct gacagttcag gcatggtgtc agtgattatg tggaatgctt
      961 tgtgtccaga gtggtataaa agtttgagag tgggcttgat tcttctgctt caagattatt
     1021 ctgtgaagaa gagctatcca ttaagaatcc agcctgaccc tgtggatcca cagatgaaac
     1081 taatttctac aatggaaatc tgcctgaatc ttcgagatcc tccaactaac atagttatca
     1141 ttccagaaaa gcagttgaaa tcagaatgga aattgccaaa actaattaac cgatttatta
     1201 caaggtcaga actagacgat atgccagaaa atagcatctg tgatgtaatt ggtatgttat
     1261 cctttgtggg gagggtgcaa cgatcaaaaa agaaagagaa cagtgaagac ttttggtcct
     1321 accgctggat tcacatcact gacgggactt cagagcaacc attcatagtg cagctgtttt
     1381 ccacatcgca gccagaagtc tttgaaaata tttacccaat gacatatttt gtgtgtaccc
     1441 agttgaaagt tgttagaaat aacagtcaag tacctaagct gctttatctc accacgacaa
     1501 atgaaagcag agtgcttatt actggtcata gaggccagcc atatacatat gataccaagg
     1561 ccaaaaaaat tattcagtgg attaaaacga agactaattt ggaagcaaag aacactgtta
     1621 ttggtggata ttacccctac ccaccagttc cagagacatt ttccaagtat agtcgcttta
     1681 ttaaagctga gtcactcttg acaacaataa gtgaagtgag gaaggtgatt gaagacttgc
     1741 agtacaggga acaaaagcgc attgcaattc aggggataat tactgctata aagtacatcc
     1801 cctataacca ctcagcaaaa agtgccccag catcagaaac acttcagaac gctagtccac
     1861 cctcaacatc tcaagcagct gcaaaagaag gtcattatca tgaaagaggg agtaaaaggt
     1921 ctcaagatga caggccaatg gattctctgc ctatggtttt gagtctctgc gcaaaaagaa
     1981 aaattcttca aggcccaact gcgaatccgg ttcctgttcc tcagccacat tcttctgcac
     2041 aaatgaaagg aaacaaaccc aacataccaa gtcgagaaaa ttcaactgct aatgccacag
     2101 ggaagtccaa aagaatcata aacgatagat gggagagtca gctgtggcga gataagaagt
     2161 ttagcttgag agaccatcta cattatggtc atgtcgatcc tgaaagtatt ccacggaaat
     2221 ttattttggg gcatgaaaag tttctcaccc agcagtttaa ttctcagcct gcaaaatatg
     2281 taccaccaga aggaaagccc ccaaaactgg atgaatttca gagtgcccga agtcttggac
     2341 attttgaagt aaccatccta ggtttgaacc atgagattgc gattgatgtt gcatttctac
     2401 ctatgtattc tcctgaagat gttgaaactt ctcaaatcga cacatttttg acctgcatga
     2461 attacagctg tgtgtatcca ccagcagcac ctgtcagtgg aagggtgcca gatcccaagg
     2521 cagtggcagg tgatattgta aaggcagcag ctgacctgga tagagtccac atcatcggta
     2581 tcttggatat ctgtaatttg ggtaacaata aagtggaagt ctgtttgcag aaaatttata
     2641 ctccagaata agcttcttaa agattagtag tcaaaacaat tacatgttct aattagtgta
     2701 ctgctttaaa gagaacttat tattttcttg ttattttcat cagaatttta catgaccttg
     2761 aaagttaagt ggttttcagt tcatcttgta tttagcactc acatctcata tcagattcat
     2821 tattgaaaaa aagtccagtc aattttatgt gtcaaaaatt acttcacttg tatgtgactg
     2881 ttatcctaac ttgtaacaat gtatgtttgg aataaattct ttagcaaagt gtacttttat
     2941 tccaatatct ctatacaagg taccttggct tatacaattt accagctttc tgatttcatt
     3001 cacatacagt gataaatctt acactgaaaa ttcaaagact aaggtatcat tcttctaaag
     3061 tgactaccca catttctttt tttttttttt ttttggctct ttttttttcg gagctgggga
     3121 ccgaacccag ggccttgcgc tctacccaca tttcttataa gcagggtagt acctgtcacg
     3181 tccacataca tggatcataa tgaaccaatt atccctggtc tctgcatttg ccattaagta
     3241 aatatgccaa actgccatag aaatttttca gccctttatt gtggtttcca atgccttgaa
     3301 gttttgagtg ttttggccag tgtgtagtgt taaatttaga ggctacaata tatctacatt
     3361 cgtactgggt tcgttggtaa tttcagtata tgtaatgtga ttttagactg taaaatttca
     3421 tctcacgtta atatatctga agtgcttgta tttaaagtag agaaaagtaa ctaagggaat
     3481 ttgtctcagt ctggttttct actacactgt gtttcaaagg taaataagtg gtcactctac
     3541 atttgtgaag acctgtgtct gatacccatg tgactagcta aatgaaccaa aacaactatc
     3601 aagatgaatt tgattgtagt tgaggtataa ggaaatctat gaggaaacaa gctttcctta
     3661 gaaccctata attctgtgat gtcatgtgct attgccgttt taatgtgctg ggaagcttag
     3721 gaacttaaag gtgcactgtg tataaaagtg ttcagttttc ttgataactg tatggaatag
     3781 ttaattagaa ctgtgaattt ttgtgttact agtttcacag tgttattaaa tatgttaaga
     3841 tgcagtaa
//
