LOCUS       NM_001030042            1731 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RAD9 checkpoint clamp component B (Rad9b), mRNA.
ACCESSION   NM_001030042 XM_344112
VERSION     NM_001030042.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Barroso-Chinea,P., Salas-Hernandez,J., Cruz-Muros,I.,
            Lopez-Fernandez,J., Freire,R. and Afonso-Oramas,D.
  TITLE     Expression of RAD9B in the mesostriatal system of rats and humans:
            Overexpression in a 6-OHDA rat model of Parkinson's disease
  JOURNAL   Ann Anat 250, 152135 (2023)
   PUBMED   37460044
  REMARK    GeneRIF: Expression of RAD9B in the mesostriatal system of rats and
            humans: Overexpression in a 6-OHDA rat model of Parkinson's
            disease.
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Hopkins,K.M., Wang,X., Berlin,A., Hang,H., Thaker,H.M. and
            Lieberman,H.B.
  TITLE     Expression of mammalian paralogues of HRAD9 and Mrad9 checkpoint
            control genes in normal and cancerous testicular tissue
  JOURNAL   Cancer Res 63 (17), 5291-5298 (2003)
   PUBMED   14500360
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Mar 9, 2021 this sequence version replaced NM_001030042.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099750.1, SRR26360172.467757.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               JAXUCZ010000012.1  39878800-39878973
            175-245             JAXUCZ010000012.1  39880395-39880465
            246-395             JAXUCZ010000012.1  39881412-39881561
            396-510             JAXUCZ010000012.1  39882089-39882203
            511-610             JAXUCZ010000012.1  39889824-39889923
            611-717             JAXUCZ010000012.1  39894483-39894589
            718-824             JAXUCZ010000012.1  39897922-39898028
            825-889             JAXUCZ010000012.1  39898116-39898180
            890-1009            JAXUCZ010000012.1  39899332-39899451
            1010-1238           JAXUCZ010000012.1  39900742-39900970
            1239-1731           JAXUCZ010000012.1  39908649-39909141
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1731
                     /gene="Rad9b"
                     /note="RAD9 checkpoint clamp component B"
                     /db_xref="GeneID:363924"
                     /db_xref="RGD:1308223"
     exon            1..174
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..1349
                     /gene="Rad9b"
                     /EC_number="3.1.11.2"
                     /note="cell cycle checkpoint control protein RAD9B
                     homolog; DNA repair exonuclease rad9 homolog B"
                     /codon_start=1
                     /product="cell cycle checkpoint control protein RAD9B"
                     /protein_id="NP_001025213.2"
                     /db_xref="GeneID:363924"
                     /db_xref="RGD:1308223"
                     /translation="MPPFPVAMLKCGMTGGQVKVFGKAIQTLSRVSDELWLDPSEKGL
                     ALRSVNSCHSTYGYVLFSSVFFQHYQWSPSATITDSDIPLNLNCKLAIKSILPIFRCL
                     NYLERSIEKCTMVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANIL
                     MIKPRLLAEAIALLTSNQEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFD
                     FFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILA
                     TLLDYPSRTSSPQSLRLSQARRSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKDPP
                     DSSSAAETRRASASQDDISEVPESVVSDMEEGQSPSPLRKFSCMFFGAVSCEQQEHAN
                     HPLGSLAVASDSEQDASG"
     exon            175..245
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            246..395
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            396..510
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            511..610
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            611..717
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            718..824
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            825..889
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1009
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1238
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1731
                     /gene="Rad9b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaaaaaaa aacggtgctg cgagaaattc ctcgcgggtg gggcaaggta gaagcggagc
       61 gggcggaaag tgagagcaac atccgggcac ctgcgtctgg agcgcttctg cccgccatgc
      121 ctccttttcc cgtagccatg ctgaagtgtg ggatgacggg cggtcaggtg aaagtgtttg
      181 ggaaagcaat tcaaactcta tcacgagtga gcgatgaact gtggctagac ccgtctgaaa
      241 aaggtcttgc tctgagatct gtgaattctt gtcattccac atatggctac gtcctgttct
      301 cgtctgtgtt ttttcaacat tatcaatggt ccccctcagc cacgataaca gacagtgaca
      361 taccactgaa tttaaattgc aaactggcaa taaagtcaat cctgccaatc tttagatgtc
      421 tgaattacct tgaaagaagc atagagaagt gtacaatggt cgccagatcg gacagatgca
      481 gagtcgtcat ccagttcttc ggcaggcatg gtattaaaag aactcacaat gtgtatttcc
      541 aagactgcca gcccttgaaa attctctttg aaaagagctt gtgtgcgaac atcctgatga
      601 ttaaaccaag actgctggct gaggccattg ctcttctaac atcgaatcaa gaggaagtca
      661 ccttctccgt taccccagag aatttctgcc tcaagagctc gagtggggaa tcactggatt
      721 taaccagctc tgtgtacagt gagatgtctt ttggcccgga agagtttgac ttctttcagg
      781 ttggacttga taccgagata accttttgct ttaaagaact gaaggggatc ctcaccttct
      841 cagaagtgat gcacgcaccc attgccatct actttgactt tcctggaaaa ccagttgttc
      901 tgagtgtgga agacatgctc ttggaggcga gctttatcct ggccacctta ttggactatc
      961 caagtagaac atcttcacca cagtcactgc gcctttccca ggcacgaagg tcagacccca
     1021 cactgtccgg tgctcaggag ggtaaaagcc gagtcagcca gaccccagag agcatctctc
     1081 gagcagcgcc caaaaggctg tttcccaagg atcctcctga cagcagctct gcagcagaga
     1141 ccaggagagc cagcgccagc caggatgaca tctccgaggt gcctgagagt gttgtcagtg
     1201 atatggagga agggcaaagt ccctcacccc tcagaaagtt ttcctgcatg ttctttggag
     1261 cagtatcttg tgaacagcaa gagcatgcca accacccctt gggcagtctg gcagtagcaa
     1321 gcgacagtga acaggacgcg agtggatgaa cgtccacgct aaggctgtaa tagccacacc
     1381 gggcgcttgg ctccctgaag gccaagggga aactgagcaa actgtcccag gatgccctgg
     1441 agacagtgtc tctgctcttg ccaggatcac tgtgcactaa aatctgtgtc acttggggga
     1501 cagagctggc cgcacaagga tgagccatcg gggttagatg ccactgttta accctgcagc
     1561 cttggcatgt cccctgtgga tccctaaggc agacttccct cagcatctgg gtgaggtgga
     1621 gcttctgtac ctgacagcag ccttccagct tatgtgagac ctgacaggct ttgttcagtg
     1681 ttgtttttca gagtagagaa aaggtggtga ataaaagaca tacagttaac t
//
