LOCUS       XM_002728854            2041 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RAD9 checkpoint clamp component A
            (Rad9a), transcript variant X1, mRNA.
ACCESSION   XM_002728854
VERSION     XM_002728854.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427594.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002728854.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2041
                     /gene="Rad9a"
                     /note="RAD9 checkpoint clamp component A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 1 long SRA read, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 225 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100361529"
                     /db_xref="RGD:2319938"
     CDS             118..1296
                     /gene="Rad9a"
                     /codon_start=1
                     /product="cell cycle checkpoint control protein RAD9A
                     isoform X1"
                     /protein_id="XP_002728900.1"
                     /db_xref="GeneID:100361529"
                     /db_xref="RGD:2319938"
                     /translation="MKCLITGGNVKVLGKAVHSLSRIGDELYLEPLKDGLSLRTVNSS
                     RSAYACFLFAPLFFQQYQEASPGQDLLRCKILMKSFLSVFRSLATVEKTVEKCCISLS
                     GSNSHLVVQLHCKYGVKKTHNLSFQDCESLQAVFDPASCPHLLRTPARVLAEAVLSFP
                     LALTEVTLGIGRGRRVILRSYQEEEADSTSKAMVTETSIGEEDFQQLHAPEGRAVTFC
                     LKEFRGLLSFAESANLPLTIHFDVPGRPVIFTVEDSLLDAHFVLATLLEQDSCSQDLC
                     SPKPHQPVPQKQPHSTPHSDDFTNDDIDCYMIAMETTVGNESSRAQPSTSLPPVPQAS
                     HDLAPPSEEEEEEAEPSTVPGTPPPKKFRSLFFGSILAPIHSPQGPNPVLAEDSDGEG
                     "
ORIGIN      
        1 gggacggtgc gcgggaagag aactttaggc attcctagta gctgctggga ctcgttgtgg
       61 gttgtatccc gtcccggtct ggttgtaaaa caagctcggc ctcagtgttt atgtaccatg
      121 aagtgcctga tcactggggg caacgtgaag gtgctgggaa aggctgtcca ttcgctatcc
      181 cgaatcgggg acgagctcta tctggaaccc ttgaaggacg ggctctccct acggactgtg
      241 aactcttccc gttctgccta tgcctgcttc ctctttgccc ccctcttctt ccagcaatac
      301 caggaagctt cccctggtca ggatctgctg cgctgtaaga tcctgatgaa gtccttcctg
      361 tccgtcttcc gctctctggc aacggtggag aagactgtgg agaagtgctg catctccctc
      421 agtggcagca acagccacct ggtggtccag cttcactgca aatatggggt caagaagaca
      481 cacaacctct ccttccagga ctgtgaatcc ctgcaggctg tcttcgaccc agcctcatgc
      541 ccccacttac tccgcacccc agcacgggtt ctggcagagg cggttctgtc ctttcccctt
      601 gcgttgactg aggtgaccct gggcattggc cgtggccgac gcgtcatcct gcgcagctac
      661 caggaagagg aggcagatag caccagcaag gccatggtga ctgagacgag cattggggag
      721 gaggacttcc agcagctgca tgccccagaa gggagagctg tcaccttctg tctcaaggaa
      781 tttcgggggc tcctgagctt tgcagagtct gcaaatttgc ctcttactat ccactttgat
      841 gttccaggca ggccagtcat ctttaccgtt gaggactctt tgctagatgc ccactttgtc
      901 ttggccacac ttttagagca agactcatgt tcccaggacc tgtgttcccc aaagccccat
      961 cagccagtgc ctcagaagca gccacacagc acaccccact cagatgactt taccaatgat
     1021 gacatcgact gttacatgat tgccatggaa accaccgtgg gcaacgagag ctcccgggca
     1081 cagccttcca cttccctccc acctgttccc caggcctccc atgaccttgc ccctccctca
     1141 gaggaggaag aggaggaagc tgagcctagt acagtgcctg ggactccccc acccaagaag
     1201 tttcgttcac ttttctttgg ctccatcctg gcccctatac attcccccca gggtcccaac
     1261 cctgtgctgg ctgaagacag tgatggtgaa ggctgaactt gagaaactga agtctgtgtc
     1321 caaaggctca cggaccagaa gcaggcccag ccacaggcag agttgggcat tagtctctgg
     1381 acatgagaaa aggacatgag aaaaggtcta tgccttgggt aggccccact tggctgtctg
     1441 cttcagagct acctaggcaa ccatgtttgg tctgtttact cagcctatac tctggtgccc
     1501 ggctatcacc tgacagattc ttcacctctt actttgaggc tctacagtat ctggtcagag
     1561 ccagaaactt aagcttcctt aggctcacct gcctctaaaa aagatcaatg ttgaacacac
     1621 gctctctgcc aatcatgaac tcccatcaga cccttctgtg gtcctaacac ttgggccttg
     1681 gcttagaatc ccaattgcct ctagacctga ctagccctgg ctgggcccat gtccagccac
     1741 tgtctgccct ccccggtggc tttgtaccaa aggactgctg gcccactatc tgggatgagg
     1801 gagacagagg ccatggcgag aatccagctt tgacctttat tcaagagacc agatgggttg
     1861 ccccaggatc tggctgccag ccatgcaagg ctggagaccc acaatctggt ctgccattgc
     1921 cctgagctgc agccttggcc ccaggattcc acttgcagcc accacaggtg ctggtgggag
     1981 ggagccctgg ggaattagat gctgctattg attctttaaa aaataaagga aagacactta
     2041 a
//
