LOCUS       NM_001191755            2919 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus RAD54 homolog B (Rad54b), mRNA.
ACCESSION   NM_001191755 XM_039109803 XM_232785
VERSION     NM_001191755.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Lau KF, Perkinton MS, Rodriguez L, McLoughlin DM and Miller CC.
  TITLE     An X11alpha/FSBP complex represses transcription of the GSK3beta
            gene promoter
  JOURNAL   Neuroreport 21 (11), 761-766 (2010)
   PUBMED   20531236
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Heyer WD, Ehmsen KT and Liu J.
  TITLE     Regulation of homologous recombination in eukaryotes
  JOURNAL   Annu Rev Genet 44, 113-139 (2010)
   PUBMED   20690856
  REMARK    Review article
REFERENCE   3  (bases 1 to 2919)
  AUTHORS   Kirshner M, Rathavs M, Nizan A, Essers J, Kanaar R, Shiloh Y and
            Barzilai A.
  TITLE     Analysis of the relationships between ATM and the Rad54 paralogs
            involved in homologous recombination repair
  JOURNAL   DNA Repair (Amst) 8 (2), 253-261 (2009)
   PUBMED   19061978
REFERENCE   4  (bases 1 to 2919)
  AUTHORS   Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I,
            Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA,
            Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de
            Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H,
            Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K,
            Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker
            EE, Barabasi AL and Vidal M.
  TITLE     An empirical framework for binary interactome mapping
  JOURNAL   Nat Methods 6 (1), 83-90 (2009)
   PUBMED   19060904
REFERENCE   5  (bases 1 to 2919)
  AUTHORS   Wesoly J, Agarwal S, Sigurdsson S, Bussen W, Van Komen S, Qin J,
            van Steeg H, van Benthem J, Wassenaar E, Baarends WM, Ghazvini M,
            Tafel AA, Heath H, Galjart N, Essers J, Grootegoed JA, Arnheim N,
            Bezzubova O, Buerstedde JM, Sung P and Kanaar R.
  TITLE     Differential contributions of mammalian Rad54 paralogs to
            recombination, DNA damage repair, and meiosis
  JOURNAL   Mol Cell Biol 26 (3), 976-989 (2006)
   PUBMED   16428451
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000161.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001191755.4.
            
            On or before Jan 4, 2023 this sequence version replaced
            XM_039109803.1, NM_001191755.2.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132301,
                              SAMD00132304 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                JACYVU010000161.1  456241-456323
            84-231              JACYVU010000161.1  460440-460587
            232-343             JACYVU010000161.1  464696-464807
            344-538             JACYVU010000161.1  495337-495531
            539-820             JACYVU010000161.1  497742-498023
            821-983             JACYVU010000161.1  506432-506594
            984-1209            JACYVU010000161.1  508502-508727
            1210-1417           JACYVU010000161.1  510430-510637
            1418-1557           JACYVU010000161.1  513232-513371
            1558-1848           JACYVU010000161.1  517918-518208
            1849-2024           JACYVU010000161.1  522315-522490
            2025-2286           JACYVU010000161.1  523217-523478
            2287-2353           JACYVU010000161.1  525476-525542
            2354-2554           JACYVU010000161.1  525709-525909
            2555-2919           JACYVU010000161.1  528395-528759
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..2919
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /note="RAD54 homolog B"
                     /db_xref="GeneID:313063"
                     /db_xref="RGD:1306507"
     exon            1..83
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            84..231
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..2766
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /note="RAD54, S. cerevisiae, homolog of, B; DNA repair and
                     recombination protein RAD54B"
                     /codon_start=1
                     /product="fibrinogen silencer-binding protein"
                     /protein_id="NP_001178684.2"
                     /db_xref="GeneID:313063"
                     /db_xref="RGD:1306507"
                     /translation="MRRSAAPSQVRGNSSKKARFVPPGRSTTGVSKEISMSPEAKLVQ
                     GAHQSQGDAGVCSSNPWLTEGSPVEMGDGARVDPLSPVHLASKEIIESKAQEEEASSL
                     LKYFSVVWCKASKKKHKKWEGDAILIVKGRSFILKDMEGKDIGRGIGYKFKELENVEE
                     GQTLMLGGKEIEILGTVSAEDFNSGKCFQAGSGSPAVPSSQAARKCFSNPFKSVCQST
                     QARRDRGNDWQNCKPRYDPYTPNALVMPRPDKSHQWAFNRSCLPTVDVVIDPHLVRHL
                     RPHQKDGVAFLYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPI
                     VKRTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDQDHKVEEFINSAFHSVLIISYEM
                     LLRSLDRIKTITFGLLICDEGHRLKNSGIKTTAALSSLSCEKRVILTGTPVQNDLQEF
                     FALVDFVNPGILGSLSSYRRIYEEPIVMSREPSASKEERELGERRTTELTRLTGCFIL
                     RRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLSSQSVRFCLQGLLGNSAHLICIG
                     ALKKLCNHPRLLFSFVKGKEFNSSRDENEERSLCQGLLTVFPAGYNLLQLSESESGKL
                     QVLVKLLAAISELRPTEKVILVSNYRQTLNLLEEVCKCHGYACARLDGQTPVSQRQQI
                     VDNFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMARVWRDGQK
                     HPVHVYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEQIQFSVEELKNLFTLHEN
                     SHCVTHDLLDCECTGEKDHSDDASENPVTSRQCQLGPQKSSSSRPLSMSQLKQWKHFS
                     GDHLNLPDPFLERIRENVSFFFQNITNQAPAI"
     exon            232..343
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            344..538
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            539..820
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            821..983
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1209
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1417
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            1418..1557
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1848
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..2024
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            2025..2286
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            2287..2353
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2554
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
     exon            2555..2919
                     /gene="Rad54b"
                     /gene_synonym="Fsbp; RGD1306507"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtatgaaggc ggaagctcga gctggccggc ctaaggcatt gctacttgct gccgggtgct
       61 cgcggtttca gtcagcttgc cgggttagtg ttgttgaaga tgagacgttc tgcagcacca
      121 agccaggtgc ggggaaattc ctctaaaaaa gcaagatttg tacctccagg aagaagtact
      181 acaggtgtga gtaaggagat ttcgatgagt ccagaggcaa aactggttca gggcgcccac
      241 cagtcacaag gggatgcagg tgtgtgcagt tccaatcctt ggctcactga gggaagccct
      301 gtggagatgg gtgacggggc tagagtagat ccgctttctc cagttcactt ggcctctaaa
      361 gaaatcatag agtccaaggc acaagaagag gaagctagca gcttgcttaa atatttcagt
      421 gtcgtttggt gtaaagcttc aaagaaaaaa cacaagaaat gggaaggcga tgctattctt
      481 attgtaaaag gaaggtcgtt catattgaaa gatatggaag gaaaagatat tggaagaggc
      541 attggatata aattcaaaga gcttgaaaat gtagaagaag gccaaacatt gatgcttggt
      601 gggaaagaaa tagagatcct gggtacagtc tctgctgagg acttcaatag tggcaagtgt
      661 tttcaggctg gaagcggaag tcctgccgtc ccaagttctc aggctgccag gaaatgcttt
      721 tctaaccctt tcaagagtgt gtgtcagtca actcaagcaa ggagagacag agggaatgac
      781 tggcaaaatt gcaaacctcg ctatgaccca tacacaccaa atgcccttgt tatgcctcga
      841 ccagacaaga gtcaccagtg ggcgtttaat aggagctgcc ttcctactgt ggatgtggtg
      901 atagaccctc accttgtacg tcacctccga ccacaccaga aagatggggt cgccttcctc
      961 tatgagtgtg tgatgggaat gagagcagtt ggcaaatgtg gtgccattct tgctgatgag
     1021 atgggattag ggaaaaccct gcagtgtatc tcgctcatct ggaccctcca gtgtcagggg
     1081 ccttacgggg gcaagccaat agtaaagagg acacttattg ttacccctgg aagcttggtg
     1141 aataattgga gaaaagaatt tcaaaaatgg ctgggaagcg aaaggatcaa gatattcact
     1201 gttgatcagg accataaagt cgaggagttt atcaattctg catttcactc tgttcttatc
     1261 atcagttatg aaatgttact tcgttctcta gatcgaatta agaccataac atttggcctt
     1321 ctgatttgtg atgaggggca ccggttgaag aacagtggta ttaagacaac agcagccctt
     1381 tctagcctct cttgtgagaa gagagtaatt ctgactggta ccccagttca gaatgatttg
     1441 caagagtttt ttgcattagt tgattttgtt aatccaggaa tcttagggtc tctgtcatct
     1501 tataggagga tatatgaaga gcccattgtt atgtcaagag agccttctgc ttccaaggaa
     1561 gagagagagt taggggagag aagaacaact gagctcacac gcctcactgg atgtttcatc
     1621 cttagaagaa ctcaggaggt catcaataaa tatctccccc ctaagataga gaacgtagtc
     1681 ttttgccgac caggagcact gcagattgag ctttaccgaa agctgctgag ttctcaatct
     1741 gtcaggttct gtctgcaagg ccttttggga aatagtgctc acctcatttg cataggcgcc
     1801 ctgaagaagc tatgcaatca tcctcgcctc ttgttcagct ttgtgaaggg taaagaattt
     1861 aactcgagtc gtgatgaaaa tgaagaaagg agcctttgcc aaggcttgct gactgtgttc
     1921 cctgctggct acaacctgct gcagctctcc gagagcgagt cagggaaact acaggtgtta
     1981 gtaaagctcc tggcggcgat ctctgaactt cgtcccactg aaaaagtgat tttggtatcc
     2041 aactacagac aaaccttgaa tcttttagaa gaagtatgca agtgtcatgg atatgcttgt
     2101 gcaagacttg atggacaaac accagtctct caaagacagc aaattgttga taatttcaat
     2161 agtaaatact ctactgattt tattttttta ttaagttcaa aagctggtgg tgtgggactt
     2221 aatcttattg gaggatctca cttaattctt tatgatattg attggaaccc agctactgac
     2281 atccaggcca tggctagagt gtggagagac ggccagaaac accctgtcca tgtttacaga
     2341 ctcctgacta caggtacaat agaggaaaag atctatcaaa ggcagatcag taagcaaggc
     2401 ctttctgggg cggttgtaga cctaaccaga tcatccgaac agatccagtt ttcagtggaa
     2461 gagcttaaaa acttgttcac attacatgaa aattcacatt gtgttactca tgacctgctt
     2521 gactgtgagt gcacaggaga gaaagatcac tctgatgatg cgtcggaaaa ccctgtcacc
     2581 tctagacagt gtcagcttgg ccctcagaag tccagctcct cgagacctct gtccatgtca
     2641 cagctgaagc agtggaaaca tttttcagga gaccatttaa atctcccaga cccatttctc
     2701 gaaagaataa gggaaaatgt gtccttcttt ttccagaata taaccaacca agctcctgcc
     2761 atctaatgaa ggaccacttt ccaacatttc tgtactcccc ttaaaaatta atataggaat
     2821 taactgtaat cttgaaaatg acaaaattat ttaaattata atagtgaact ttgtttcaca
     2881 atatgtctat ttatgtacaa taaaacctga gttgttttt
//
