LOCUS       XM_039107433            3300 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RAD52 homolog, DNA repair protein
            (Rad52), transcript variant X4, mRNA.
ACCESSION   XM_039107433
VERSION     XM_039107433.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107433.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3300
                     /gene="Rad52"
                     /note="RAD52 homolog, DNA repair protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 8 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 38 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:297561"
                     /db_xref="RGD:1304975"
     CDS             165..1466
                     /gene="Rad52"
                     /codon_start=1
                     /product="DNA repair protein RAD52 homolog isoform X3"
                     /protein_id="XP_038963361.1"
                     /db_xref="GeneID:297561"
                     /db_xref="RGD:1304975"
                     /translation="MAGAEEAVHGGCDCRPPFVGGKSVLLFGQSQYTADEYQAIQKAL
                     RQRLGPEYISSRMAGGGQKVCYIEGHRVINLANEMFGYNGWAHSVTQQNVDFVDLNNG
                     KFYVGVCAFVRVQLKDGSYHEDVGYGVSEGLRSKALSLEKARKEAVTDGLKRALRSFG
                     NALGNCILDKDYLKSLNRLPRQLPLEVDLTTTKREDFEPSVEQARYNSCRQDKASGLP
                     KPQEAASPCRPSHPHDSNIKLQGAKDSSSSSCSLATTSESDATHQRKLRKLRQKQLQQ
                     QFREQMEAHRLSHAPAEEVEAKREALPAPPKHSTPVPAASACLREKAVLPDNLEENLE
                     MWDLTPDLEDIIKPLCRTEPPQTSVTRTLNNQAVIQDSVPHIHCHQKVQEKPGPGHLQ
                     TCSTNQHVLGSRGSWKSRDSGFNSIKWKGKKTLNLIGRART"
ORIGIN      
        1 tcgacttcgg acttgactta cggctcctct tctgttattc tttgggctca gaccttcttc
       61 ccagcgttcc ctgagcttgc gcctcgatct cttctgcgag gccctctcca gcctcccagc
      121 acccaggacc gagctcctgc gtgcaccgcg ttccgagagt caatatggct ggggctgaag
      181 aagcggtcca tggaggctgt gactgccgtc ctccgtttgt tggtgggaag tctgtgcttc
      241 tctttggaca gagccaatac acagcagatg aataccaggc catccagaaa gccctgaggc
      301 agaggctggg gccagagtac attagcagcc gcatggcggg aggaggtcag aaggtgtgtt
      361 atattgaagg tcaccgggta attaatctgg ccaatgagat gtttggttac aatggctggg
      421 cacactccgt cacccagcag aatgtggatt ttgttgacct caacaatggc aagttctacg
      481 tgggagtctg tgcatttgta agggtgcagt taaaggatgg ttcctaccat gaggatgtgg
      541 gctatggagt tagtgagggc ctcagatcga aggctttgtc actggagaag gccaggaagg
      601 aggctgtgac tgacgggctg aaacgggcac tcaggagttt tgggaatgca cttggaaact
      661 gcattctgga taaagactat ctgaagtcgc tgaataggct gcctcggcag ctcccacttg
      721 aagtggattt aactacaaca aagagagaag attttgaacc atctgtagaa caggcaagat
      781 ataacagctg ccgacaggat aaagcatcgg ggctccccaa accacaggaa gcagcttctc
      841 cttgcagacc aagccaccca catgattcga acattaagct acagggggct aaggacagca
      901 gcagcagctc ctgcagtctg gccaccacct cagagagtga tgccactcac cagaggaagc
      961 tccggaagct ccggcagaag cagttacagc agcagttccg ggaacagatg gaggctcacc
     1021 ggcttagcca cgcacctgcc gaagaggtgg aagccaagcg tgaggcactt ccagcccctc
     1081 caaaacacag cacccccgta cctgcagcct cggcatgcct cagggagaaa gccgtccttc
     1141 cagataacct agaagagaac cttgaaatgt gggaccttac tccagactta gaggacatca
     1201 ttaagccctt gtgtagaaca gaaccacccc aaacctctgt cacccgaacc ctcaacaacc
     1261 aggcggtgat ccaggacagt gtcccacata tccattgcca ccagaaagta caagaaaaac
     1321 ctggacctgg gcacctgcag acctgcagca ctaatcagca tgtcctaggt agcagaggtt
     1381 cgtggaagag cagagattct gggtttaatt ctatcaaatg gaaaggaaag aaaactctga
     1441 atctcatagg aagagccagg acctgaagaa aaggaaacta gatccatcct gaagctcaat
     1501 aagttactag attctgccac aaaaggactt tggaaaatgc agtttggtca ccaaattatt
     1561 cccatcttgg ttcatgctga actctttaga gcctactgta gaggaagctg actacaagag
     1621 gttgttgtac cctgtgatgg gaaagaggcc aacagatgct ttaacttttt tcagtattgc
     1681 ttactcctaa gccaatgcat tgagattcta ggaaggctgc cttccgtttt aacgatgtag
     1741 ctcaccaaac ccagtttcat tgccacctac attaaatcac gtgtgacctt gcctttcctt
     1801 tggcttcagg tttttaatgt tttccactgg gtgctatcaa caaggtcacg gttagttcag
     1861 gactatgcat ggatccacag agtagcctcc ctttatctag agatgtgcca acacttaaat
     1921 ggggcactta agacttccgt cctctccatg gcatttcttt tagtgttttt gttttttgtg
     1981 tagtcctggc cgtcctgggt cttgcacctg ccccctccct ccctcccttc agagtgctgg
     2041 gattaaagga gtggctcctg tcagtgctgt gttttgagct agtaatgttt gaacgctaat
     2101 actggaagaa ttggtgtgac ttataactga gattactggt cgttagactt cttgcatggc
     2161 tgtatttggc aaaggcgtaa ttcacatcca gggtaagatt catgaacaac gcacaatttt
     2221 aaagaattgt tttctctggc tgaaacctga atgaaaaacc atgggttgtc ggggagctac
     2281 tgcataactt ctcatttaaa ggaaggaatc atagtgcata aggttgctgg gacttgaact
     2341 cagacatttc aagagcagtc agtgctctta actgttgaac cccaggaata ggtttttttt
     2401 ttcttttttt tcggagctgg ggaccgaacc cagggccttg cgcttcctag gcaagtgctc
     2461 taccactgag ctaaatcccc aacccccagg aataggtgtt ttaaagaagt aactactctc
     2521 ttgactatgt catacccaga agttcccatg attcttttca aaggaataag gaacttccaa
     2581 gtctacgtag ctgcatttag ggttatgcta tgcctaaaac aggaggaaat tggtgctctc
     2641 ttcacaccat gtgggtcctt gtggtcaagc acaggctttg tgggaagtac ctttagcccc
     2701 tgttctcaat ctcgaagcag gaacaagatt tatttgtggg aaactgagtc aaatgcttac
     2761 agaactgttg actgacagcc gtttgccata atttccctgc ctcctaacag ctgctttgcc
     2821 ttttttttcc tgaggggaaa gtaccacttt catccttgca actgctacta aaggttccca
     2881 gaaacaataa atccagctat aaactgacac atctgtgtgt tggtagtctg gcaggttgga
     2941 aaaggagaga ctcacctcat aattcatgtg tcctttgctg cctctcctgc ctgaaaaagt
     3001 ttttttgttg gtttgttaga aaggacaccc cagagttcaa caaaagcaag tttggtttat
     3061 ttgaatggtt tcattaaata agttctacaa aggtaacaaa ctgaagcacg aagcgcaatc
     3121 ttacaagaag cgcaacaccc ggagttagtg caaaatgtac agttaacggc tgctgagaaa
     3181 ccccaaggtt tgaattcagt tttaaacagt gtacattgtt aaataacgta aggaaaacat
     3241 ttataattcg gaaagttctt tttaaatgtg gaaaaagata ctcaaagtgt actattaaca
//
