LOCUS       NM_001398921            1866 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus RAD51 associated protein 1 (Rad51ap1), transcript
            variant 1, mRNA.
ACCESSION   NM_001398921 XM_006237502
VERSION     NM_001398921.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Parplys,A.C., Zhao,W., Sharma,N., Groesser,T., Liang,F.,
            Maranon,D.G., Leung,S.G., Grundt,K., Dray,E., Idate,R.,
            Ostvold,A.C., Schild,D., Sung,P. and Wiese,C.
  TITLE     NUCKS1 is a novel RAD51AP1 paralog important for homologous
            recombination and genome stability
  JOURNAL   Nucleic Acids Res 43 (20), 9817-9834 (2015)
   PUBMED   26323318
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Yuan,J. and Chen,J.
  TITLE     FIGNL1-containing protein complex is required for efficient
            homologous recombination repair
  JOURNAL   Proc Natl Acad Sci U S A 110 (26), 10640-10645 (2013)
   PUBMED   23754376
REFERENCE   3  (bases 1 to 1866)
  AUTHORS   Kovalenko,O.V., Wiese,C. and Schild,D.
  TITLE     RAD51AP2, a novel vertebrate- and meiotic-specific protein, shares
            a conserved RAD51-interacting C-terminal domain with RAD51AP1/PIR51
  JOURNAL   Nucleic Acids Res 34 (18), 5081-5092 (2006)
   PUBMED   16990250
REFERENCE   4  (bases 1 to 1866)
  AUTHORS   Kovalenko,O.V., Golub,E.I., Bray-Ward,P., Ward,D.C. and
            Radding,C.M.
  TITLE     A novel nucleic acid-binding protein that interacts with human
            rad51 recombinase
  JOURNAL   Nucleic Acids Res 25 (24), 4946-4953 (1997)
   PUBMED   9396801
REFERENCE   5  (bases 1 to 1866)
  AUTHORS   Mizuta,R., LaSalle,J.M., Cheng,H.L., Shinohara,A., Ogawa,H.,
            Copeland,N., Jenkins,N.A., Lalande,M. and Alt,F.W.
  TITLE     RAB22 and RAB163/mouse BRCA2: proteins that specifically interact
            with the RAD51 protein
  JOURNAL   Proc Natl Acad Sci U S A 94 (13), 6927-6932 (1997)
   PUBMED   9192668
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 28, 2021 this sequence version replaced XM_006237502.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1319054.1,
                                           SRR26360181.783300.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000004.1  161458476-161458559 c
            85-140              JAXUCZ010000004.1  161456114-161456169 c
            141-276             JAXUCZ010000004.1  161454866-161455001 c
            277-386             JAXUCZ010000004.1  161452136-161452245 c
            387-473             JAXUCZ010000004.1  161450450-161450536 c
            474-626             JAXUCZ010000004.1  161449890-161450042 c
            627-788             JAXUCZ010000004.1  161448697-161448858 c
            789-938             JAXUCZ010000004.1  161447173-161447322 c
            939-1866            JAXUCZ010000004.1  161445610-161446537 c
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1866
                     /gene="Rad51ap1"
                     /note="RAD51 associated protein 1"
                     /db_xref="GeneID:689055"
                     /db_xref="RGD:1597431"
     exon            1..84
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1084
                     /gene="Rad51ap1"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="RAD51-associated protein 1 isoform 1"
                     /protein_id="NP_001385850.1"
                     /db_xref="GeneID:689055"
                     /db_xref="RGD:1597431"
                     /translation="MVRPTRNKKPVNYSQFEDSGNDSDDDFISASIPVNKSKTVPKVL
                     KQDKPKPNLKNLQKEEVLPTEPPKKRMALDDKVFQRGLEVALALSVKELPTLTNQVKK
                     PEERSTDTTGKRKTEKTDKPPRVSNCSVASDDVEDLNKITEEGDVRDVEGERRTTSKA
                     RAQQRRKLSEGSSGSSADGTEPDSATGEDSESDPDFDESEESDEDFGVRRGKETKKKP
                     VQKKPKAEKKERKSKPKREEASVTSADPAPAAIKSGSPALPQPVGLPSEATRKPAKIC
                     SPSAESKRPKWVPPAASGSRNSSSSSWAGTPARSPSQSLRLGLSRLAPVKSLHPSTTS
                     SQVR"
     exon            85..140
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            141..276
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            277..386
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            387..473
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            474..626
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            627..788
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            789..938
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1866
                     /gene="Rad51ap1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgggaat tgaaaccgcc acagctgctc tccagctcca ggtcgctgct gtcctaggaa
       61 gggcaccatg gtgcgcccta ccagaaataa aaaaccagtc aattattcac agtttgagga
      121 ttctggcaat gactctgatg atgattttat ttctgcatct atacctgtaa acaagtcaaa
      181 aaccgtgcca aaagtgttaa agcaagacaa gccaaaacct aacttgaaga atctccaaaa
      241 agaagaggtc ttaccaacag aaccccctaa aaaaaggatg gctttagatg acaaggtctt
      301 ccagagaggc ctagaagttg ccctggcctt atctgtgaag gaacttccaa cactcaccaa
      361 ccaagtgaag aagcccgaag agagaagcac tgacacaacc ggcaaaagga aaacggaaaa
      421 gacagataaa cctcctcgag tctctaactg cagtgtagcc agtgatgatg tagaagattt
      481 gaacaagatc acagaggagg gggacgtcag agatgttgaa ggagagagga gaacaacatc
      541 taaagccagg gctcagcaga ggaggaagct ctcagaaggc agcagtggca gcagtgctga
      601 cggcactgag ccggacagtg cgactggtga agattcagaa agtgatcctg attttgatga
      661 gagtgaggaa agcgatgaag actttggtgt gagaagaggt aaagaaacaa agaagaaacc
      721 agtgcagaag aaacccaaag cagaaaagaa ggaaaggaaa tcaaaaccca aacgtgagga
      781 ggcatcagtg acttcagcag acccagctcc agctgccatc aaatcaggat ctccagcctt
      841 accccagcca gttggtcttc cttccgaggc cactaggaaa ccagcaaaaa tatgcagccc
      901 ttcagcagaa agcaagaggc ccaagtgggt ccccccagcc gcctccggga gcagaaactc
      961 tagcagcagc tcatgggcag gaacccccgc caggtccccg agtcagagcc tgcgtctggg
     1021 cctctcccga ttagcaccag ttaagagttt gcatccaagt accacaagca gccaagtacg
     1081 gtagcaggaa aggacctctg agacccttgg gactgcagag cgggttgtca tattcagcgt
     1141 ccacataaaa gaacctttaa tggatcacat gaaggagctc tgtgtgattc tggtctcatc
     1201 aaaaccttct gcccttcagc aaagattctg gggcctctcc ttgtgccact cctgaagagt
     1261 gaagagtgtg ttgtgttttc ttatgtttca taagtcaccg tcactcgggc tttgcggcac
     1321 atcggcaatc acatgtcctc caactctgtc tggcaaaagg gcatcctggg ttccttcagg
     1381 aggcgtttct gaaatctttc ccatgctaca tttctgtagc tttgtgagaa gcttgctctt
     1441 tatccaggtc ttttttagtg agagttctgc tttttgtaca tattaaaatg tcgactgtac
     1501 tgcagcatgt gtccctccgt ggggacaggt ggttagcgtg tagctgatct tataacactg
     1561 tatgaacttc tcaatgtcag accctttaat aagagtggaa aggttaaaat gcgctcactg
     1621 ataccatgcg tctccgtgtg tctgtttgct aatgtgagtc ttgtgtgtca gcataagcaa
     1681 ggggaagtgg tgtcttcacc ttagataaag cccgaggtga aagactgtca cccctgtcat
     1741 cagctgatgc agtttctcaa gaagcttaga tttattgtca ataaaaataa ttatttttat
     1801 ggtgagaata tcacttatgg tgttcctgat cactttttaa taaaaaaatt aatggcttac
     1861 cataaa
//
