LOCUS       NM_001025275            2795 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus RAD23 homolog B, nucleotide excision repair
            protein (Rad23b), mRNA.
ACCESSION   NM_001025275 XM_216381
VERSION     NM_001025275.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Aiello,F.B., Guszczynski,T., Li,W., Hixon,J.A., Jiang,Q.,
            Hodge,D.L., Massignan,T., Di Lisio,C., Merchant,A., Procopio,A.D.,
            Bonetto,V. and Durum,S.K.
  TITLE     IL-7-induced phosphorylation of the adaptor Crk-like and other
            targets
  JOURNAL   Cell Signal 47, 131-141 (2018)
   PUBMED   29581031
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Cattoglio,C., Zhang,E.T., Grubisic,I., Chiba,K., Fong,Y.W. and
            Tjian,R.
  TITLE     Functional and mechanistic studies of XPC DNA-repair complex as
            transcriptional coactivator in embryonic stem cells
  JOURNAL   Proc Natl Acad Sci U S A 112 (18), E2317-E2326 (2015)
   PUBMED   25901318
REFERENCE   3  (bases 1 to 2795)
  AUTHORS   Compe,E. and Egly,J.M.
  TITLE     TFIIH: when transcription met DNA repair
  JOURNAL   Nat Rev Mol Cell Biol 13 (6), 343-354 (2012)
   PUBMED   22572993
  REMARK    Review article
            Erratum:[Nat Rev Mol Cell Biol. 2012 Jul;13(7):476]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2795)
  AUTHORS   Bergink,S., Toussaint,W., Luijsterburg,M.S., Dinant,C.,
            Alekseev,S., Hoeijmakers,J.H., Dantuma,N.P., Houtsmuller,A.B. and
            Vermeulen,W.
  TITLE     Recognition of DNA damage by XPC coincides with disruption of the
            XPC-RAD23 complex
  JOURNAL   J Cell Biol 196 (6), 681-688 (2012)
   PUBMED   22431748
REFERENCE   5  (bases 1 to 2795)
  AUTHORS   Sugasawa,K., Akagi,J., Nishi,R., Iwai,S. and Hanaoka,F.
  TITLE     Two-step recognition of DNA damage for mammalian nucleotide
            excision repair: Directional binding of the XPC complex and DNA
            strand scanning
  JOURNAL   Mol Cell 36 (4), 642-653 (2009)
   PUBMED   19941824
REFERENCE   6  (bases 1 to 2795)
  AUTHORS   Ng,J.M., Vrieling,H., Sugasawa,K., Ooms,M.P., Grootegoed,J.A.,
            Vreeburg,J.T., Visser,P., Beems,R.B., Gorgels,T.G., Hanaoka,F.,
            Hoeijmakers,J.H. and van der Horst,G.T.
  TITLE     Developmental defects and male sterility in mice lacking the
            ubiquitin-like DNA repair gene mHR23B
  JOURNAL   Mol Cell Biol 22 (4), 1233-1245 (2002)
   PUBMED   11809813
REFERENCE   7  (bases 1 to 2795)
  AUTHORS   Vinson,R.K. and Hales,B.F.
  TITLE     Nucleotide excision repair gene expression in the rat conceptus
            during organogenesis
  JOURNAL   Mutat Res 486 (2), 113-123 (2001)
   PUBMED   11425516
REFERENCE   8  (bases 1 to 2795)
  AUTHORS   Araki,M., Masutani,C., Takemura,M., Uchida,A., Sugasawa,K.,
            Kondoh,J., Ohkuma,Y. and Hanaoka,F.
  TITLE     Centrosome protein centrin 2/caltractin 1 is part of the xeroderma
            pigmentosum group C complex that initiates global genome nucleotide
            excision repair
  JOURNAL   J Biol Chem 276 (22), 18665-18672 (2001)
   PUBMED   11279143
REFERENCE   9  (bases 1 to 2795)
  AUTHORS   Sugasawa,K., Ng,J.M., Masutani,C., Iwai,S., van der Spek,P.J.,
            Eker,A.P., Hanaoka,F., Bootsma,D. and Hoeijmakers,J.H.
  TITLE     Xeroderma pigmentosum group C protein complex is the initiator of
            global genome nucleotide excision repair
  JOURNAL   Mol Cell 2 (2), 223-232 (1998)
   PUBMED   9734359
REFERENCE   10 (bases 1 to 2795)
  AUTHORS   Masutani,C., Sugasawa,K., Yanagisawa,J., Sonoyama,T., Ui,M.,
            Enomoto,T., Takio,K., Tanaka,K., van der Spek,P.J., Bootsma,D. et
            al.
  TITLE     Purification and cloning of a nucleotide excision repair complex
            involving the xeroderma pigmentosum group C protein and a human
            homologue of yeast RAD23
  JOURNAL   EMBO J 13 (8), 1831-1843 (1994)
   PUBMED   8168482
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098674.1.
            
            On Jul 14, 2005 this sequence version replaced XM_216381.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098674.1, SRR8487226.201234.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..2795
                     /gene="Rad23b"
                     /note="RAD23 homolog B, nucleotide excision repair
                     protein"
                     /db_xref="GeneID:298012"
                     /db_xref="RGD:1562958"
     exon            1..358
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     CDS             293..1540
                     /gene="Rad23b"
                     /note="RAD23b homolog"
                     /codon_start=1
                     /product="UV excision repair protein RAD23 homolog B"
                     /protein_id="NP_001020446.1"
                     /db_xref="GeneID:298012"
                     /db_xref="RGD:1562958"
                     /translation="MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQ
                     KLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSS
                     PAAAVAQAPAPTPALAPTSTPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTS
                     PAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP
                     DRAVEYLLMGIPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPL
                     EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE
                     AGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQA
                     YFACEKNENLAANFLLQQNFDED"
     exon            359..440
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            441..520
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            521..789
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            790..845
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            846..973
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1109
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1237
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1426
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
     exon            1427..2760
                     /gene="Rad23b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcggcgagt cacggtgatg gcggccacca tcctgtggtg aggtagcgga ttctctgcgt
       61 ctctccggga gtccctcgcg cctcctgcgg gcccggtgtc tggcgcgtga ggaagcaccg
      121 cgggtcgagc ttgcggggaa aggcgcggga gcggcggcgc ggccggggga cgcggggccc
      181 ggggtgagcg cgactccggg cgaatgtgac aagcccccac ccccaccgcc ttcctcccga
      241 gagcgcgagg atcgcggcca ccccggggcg gccaggcccc ggcttaggca ccatgcaggt
      301 caccctgaag acccttcagc agcagacctt caagatcgac atcgacccgg aggagacggt
      361 aaaggcattg aaagagaaga ttgaatctga gaaggggaaa gatgcctttc cggtagcagg
      421 tcagaagtta atttatgcag gcaaaatcct cagtgatgat actgctctca aagaatataa
      481 aattgatgag aaaaactttg tggtggttat ggtgacaaag cccaaagcag tgacatcagc
      541 agtgccagct acaacccagc aatcaagttc tcccagcacc actacagtca gctcctcccc
      601 tgcagcagct gtggcccagg ctccagctcc cacccctgct ctggctccca cttccacacc
      661 tgcctccacg actccagcct caactacagc atcttctgaa cctgcaccta ctggtgcaac
      721 tcagcccgag aaacctgcag aaaagccagc acagacacca gtgcttacta gcccagcacc
      781 agctgacagt acaccaggag attcttctcg gtcaaatctt tttgaagatg caacaagtgc
      841 ccttgtgaca ggtcagtctt acgagaatat ggtaactgag atcatgtcaa tgggctatga
      901 acgagaacaa gtaattgcag ccctgagagc cagcttcaac aaccctgata gagctgtgga
      961 atatcttcta atgggaatcc ctggagacag agaaagtcag gccgtggttg atcctcctcc
     1021 acaggctgtg agtactggaa ctcctcagtc tccagcagta gctgcagctg cagcaaccac
     1081 aacagcaacg acaaccacca cttctggagg ccaccccctt gagtttttac ggaatcagcc
     1141 tcagtttcaa cagatgagac aaattatcca gcagaacccc tccttgcttc ctgctttgct
     1201 acagcagata ggccgggaga accctcagtt gctgcagcaa attagccaac accaggagca
     1261 ttttattcag atgctaaatg aaccggttca ggaagctggt ggtcaaggtg gaggaggagg
     1321 tggtggaggt ggtggaggtg gaggcggtgg aggaattgca gaagctggca gtggtcacat
     1381 gaactacatc caagtaacac ctcaggagaa agaagctata gaacggttaa aggcattagg
     1441 atttcctgaa ggacttgtga ttcaagcata ctttgcttgt gagaagaacg agaatctggc
     1501 ggccaacttt cttctacagc agaactttga tgaagactga agggactctt ttgtacctca
     1561 cactcacacc agtgcattac actaaccttg ttcactggat tgtctggggt gacttgggct
     1621 catatccaca atatttggta tacggtagta ggttggtggg gtgggggtgg ggagctaggc
     1681 tatagggcag ggatacatac agtgcatgtc tgcttcagtc agcagatgct gcaggtccac
     1741 acagtgtaaa atactacaca accaaacacc gcctttacag ggctttattc ttctacgcag
     1801 taggtaactt ttcctgggtt tcattctttc tagtgtacta gatccagaaa tttagtgtga
     1861 tgccctgctt tctcttttct ttgacttaac attggtttct gaaagaatct ttgctaccta
     1921 gaatctacag tctgttttat ggcaacactg gataatggct ttttgaaatt gagggggaaa
     1981 cattggagca tctgtaaaca gaaatgccaa attattgata gtcattgttg ctgcttcaca
     2041 tgagtatgaa attgatgcag aaggaagccc attcttcatg ttcagtgctt agggtgggga
     2101 gggcagaaag ggggcttttt cttaaaatga aaataattac tgctatttta aaatttcttg
     2161 attattgaat gtgagcccct ctatctaaca tgatttgaga agctgtacac ttataggcag
     2221 agttattttc ctgtttacat tctgtgttgt ttgggggatt ggtaggtgtc tgattactgt
     2281 ttacttcact gttgtgttgc agtaaaagac ttaaaacaac cattgcatgt ttgctttcgg
     2341 tgtatccctt tgtgaaatta gcacttttgg ggccaatgaa gaaactttgc tgcatttact
     2401 ccctttccct cccctttcct cagtagaaat gtgtttgatc agcaagttgt gagtcaaact
     2461 gctgccttta aaaacaccac aaaagctgat tcagttcaaa atgaacgcac atctttcaaa
     2521 actgggtttc tgatacttgt ggatgttttt ctttattaga taagaatgta ttgccattaa
     2581 atccattagt attacattgc tttcaaagaa aaggtgggtg gaactataat ccagcatctt
     2641 ttactgcatt caaagatggg agcaaacttt tgtatggttg ggagatgtgg ctggaaagta
     2701 ctttggaaaa tatacaatca agctatttcg tcgcatatta aaagaaaaat ctcaatcaca
     2761 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
