LOCUS       NM_001024871            1616 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Rattus norvegicus Rab9 effector protein with kelch motifs (Rabepk),
            mRNA.
ACCESSION   NM_001024871 XM_216042
VERSION     NM_001024871.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC097415.1.
            
            On Jun 17, 2005 this sequence version replaced XM_216042.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097415.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1616              BC097415.1         1-1616
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..1616
                     /gene="Rabepk"
                     /note="Rab9 effector protein with kelch motifs"
                     /db_xref="GeneID:296649"
                     /db_xref="RGD:1310612"
     exon            1..233
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            234..425
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     CDS             384..1550
                     /gene="Rabepk"
                     /note="Rab9 effector p40"
                     /codon_start=1
                     /product="rab9 effector protein with kelch motifs"
                     /protein_id="NP_001020042.2"
                     /db_xref="GeneID:296649"
                     /db_xref="RGD:1310612"
                     /translation="MPTCTQFQAALTNLGTMKQLPILEPGDKPRKAAWYTLTCPGDKP
                     CPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDTATREGLLPR
                     YEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMNPEARTWSTPEVTGCPPSPRTFHTS
                     SAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPETHGSPPSPRHGHAMVAAG
                     TKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGCAAHAAVAVGHHVYVFGG
                     MTATGALNTMYKYHTEKQHWTILQFDTSLPPGRLDHSMCVIPWPVMSASDTEDSGSVI
                     LSLQDEKGDAAEKPETRSGGSREESPTTLLLCFVFGGMNTEGEIYDDCLVTVVD"
     exon            426..484
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            485..642
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            643..795
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            796..957
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1107
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1257
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1574
                     /gene="Rabepk"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccccaacccc gacaaacttc ttaatggtct tatccttggg cacgcaccgg gcgcagttcg
       61 tgcagcgaat tggctacaca tggccgcggc cctttttggc acgacagttg tttctccttt
      121 ttttggtcaa attggagcca agactcgaaa gctgtgaatc ttatctgtaa atcacagcac
      181 ttgtgtggca gaggcagcag gatcaggaat tcaaggccat cctcggctac acagcaaagc
      241 ctagcaccac tcgggaggct ggagcagaat tcaaggtcag cttggcttac atgagttcca
      301 gtccatgctt tccattcaga agtcactact aaggactgcg gtaacaaact ccgtctgaac
      361 aaggatttgg agttgtcgat cggatgccaa cctgtacaca gttccaggcc gccctgacta
      421 atttgggcac catgaagcag ctgcccatct tggagcccgg agacaagccc agaaaagctg
      481 catggtacac tctgacttgc cctggagaca agccctgccc tcgagttggc cacagctgct
      541 cgtattttcc cccagttggc gaggccgaga aagggaaggt cttcattgtc gggggagcaa
      601 atccaaacca aagcttctca gatgtacaca ccatggattt gggaacacac cggtgggaca
      661 cggccaccag ggagggcctc ttgcctcggt atgagcatgc cagcttcctt ccatcctgct
      721 ctcctcacag tatctgggtg tttggaggtg cagaccagtc aggaaatcga aactgtctac
      781 aagtcatgaa tcccgaagcc aggacatgga gcacaccaga agtgactggc tgcccaccat
      841 ccccaagaac attccacaca tcatcagcag ctattggaaa ccacctctac gtctttgggg
      901 gaggagagag aggtgcccag cccgtgcagg atgtgaagtt gcatgtattt gacgcaaaca
      961 ctctgacgtg ggctcagcca gagacgcatg gaagtcctcc atctccccgg cacggccacg
     1021 cgatggtggc agcagggaca aaactcttca tccatggagg actggcaggg gacaggttct
     1081 ttgatgatct ccactgcatt gatattggtg acatgagctg gcagaagctt ggtcccaccg
     1141 gtactgcccc agtaggctgt gctgcccatg ccgccgtggc tgtgggacac catgtgtatg
     1201 tgtttggagg aatgactgcc actggagcac tgaacacaat gtacaagtac cacacagaaa
     1261 agcagcactg gaccatactt cagtttgaca cttccctccc ccctggacgc ctggaccact
     1321 ccatgtgtgt catcccatgg ccagtgatgt ctgcctctga cactgaagac tcaggttctg
     1381 tcattctcag cctccaagat gagaaagggg acgctgctga gaaaccagag acccggagtg
     1441 gagggtcccg tgaggagagt ccgaccacac tgctgctctg ttttgtgttc ggtgggatga
     1501 atacagaagg ggagatctat gatgattgtc tcgtgaccgt agtggactaa taaaacccac
     1561 atttttatca ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
