LOCUS       XM_039091811            1888 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rabaptin, RAB GTPase binding effector
            protein 2 (Rabep2), transcript variant X1, mRNA.
ACCESSION   XM_039091811
VERSION     XM_039091811.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091811.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1888
                     /gene="Rabep2"
                     /gene_synonym="Fra; MP13"
                     /note="rabaptin, RAB GTPase binding effector protein 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 11 ESTs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 89 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:80754"
                     /db_xref="RGD:621416"
     CDS             181..1410
                     /gene="Rabep2"
                     /gene_synonym="Fra; MP13"
                     /codon_start=1
                     /product="rab GTPase-binding effector protein 2 isoform
                     X1"
                     /protein_id="XP_038947739.1"
                     /db_xref="GeneID:80754"
                     /db_xref="RGD:621416"
                     /translation="MEQEIAELKVKLLRAEELIQEIQRRPRQPASLHGSTELLPLSRN
                     PSPPLEPSEEPSGDAGPAAEAFAHNCDDSASISSFSLGGAAGSVSLRGPQGLSPEQEE
                     TASLVSTGTLVPEGIYLPPPGYQLVPDSQWEQLQVEGRQLQKELESVRRERDELQEGL
                     SRSNEDCAKQMQVLLAQVQNSEQLLRTLQGIVSQAQERVQRQMAELATSHKCLSQEVK
                     RLNEENRGLRAEQLPSSALQGSEQQEDQDEALPSSIQELHQLVRHTRQQARARQQAQE
                     HEAERLRIEIVKLREALDEETAAKASLEGQLRVQREETDVLEASLCSLRIETERVQQE
                     HHKAQLTDLLSEQRAKALRLQAELETSEQVQRDFVRLSQALQVRLEQIRQADTLEQVR
                     SILDEAPLRDIKDIKDS"
ORIGIN      
        1 aactggccgg tgcactggca gaaatggaaa ccatgaaggc tgtagctgag gtgagcgaga
       61 gcaccaaggc agaggcggtg gctgcagtgc agagacagtg ccaagaggag gtggcttccc
      121 tgcaggccat cctgaaaggc tcacgaagac tcagaaaagc ttcgggagat cgtgttgccc
      181 atggagcagg agattgcaga gctgaaggtg aagctgctga gggcggaaga gctgatccaa
      241 gagatccaga gacgaccaag gcagcctgcc tccctgcatg gctccacaga gttgcttcca
      301 ctatcaagga acccctcacc accactggaa ccctcggagg aaccaagtgg agacgcaggc
      361 ccagctgctg aggccttcgc ccacaactgt gatgacagtg cctccatctc ttccttctcc
      421 ctcggtgggg ccgccggtag tgtctcccta cgaggtcccc aaggcctcag ccctgagcag
      481 gaagagacag cttctctggt gtctactggc actctggtcc ccgagggcat ctacctaccc
      541 cctccggggt accagcttgt tccagacagc cagtgggagc aactgcaggt agaggggcgg
      601 cagctgcaga aggagctgga aagtgtccgc cgtgagcggg atgaactgca ggaaggactg
      661 agccggagca atgaggactg tgccaagcag atgcaggtgc tcctggccca ggtccagaac
      721 tcagagcagc tgctccgaac tctgcaggga atcgtgagcc aggcccagga gcgggtgcag
      781 cggcagatgg cagaactggc cacttctcac aagtgcctga gccaagaggt taaaagactg
      841 aatgaagaaa atcgaggact ccgggctgag cagctgccat cctccgccct ccagggctca
      901 gagcagcagg aggaccagga cgaggccctg ccaagctcca tacaggagct acaccagctg
      961 gtgcggcaca cccggcagca ggctcgggcc aggcagcagg cacaggagca tgaggctgag
     1021 cgcctgcgca ttgaaattgt gaagctgcgg gaggcactag acgaggagac agcagccaag
     1081 gccagtctgg agggacagct gagggtgcag cgagaagaga cagatgtgct ggaggcctcc
     1141 ctgtgcagcc tgagaataga gacagagcgg gtccaacaag agcatcacaa ggcccagctc
     1201 acagatctcc tctccgaaca gagagccaag gcactacggc tgcaggctga gctggagacc
     1261 agtgaacagg tgcagaggga cttcgtacgg ctgtcccagg ccctacaggt gcgcctggag
     1321 cagatccgcc aagcagacac tctggagcaa gtacgtagca ttctggacga ggcacccctc
     1381 agggacatta aggacattaa ggactcgtga ggggccaggc gagaggcctc cctgctgggg
     1441 aagctgcccc attctctacc agaactgtga ggtgtggact gcaggtctca gaatggagtc
     1501 cgtcagctgc aaacctggac agtggtgtcc cgggccacta cttccaccca gggtggctgg
     1561 ccctgccctc agggatgata cctggaagag ggtcctagcc tcctcccaga accaaagctt
     1621 tcaggctgcc atgctccctc atggatccag ttctcccacc ccatcacctc gggccagcag
     1681 ccagtcccac tctctgcgta cccagcttat ggctagaagc tgttggattc agtggctcct
     1741 cacatagagg ccctgggaca cacagctgct ttctggactg tatgacacta aggtttttgt
     1801 ccataggtac ccgaaatagg ccccaagaca taaggaagca aggccagact tttctgtcat
     1861 ttattttcaa taaataagca gtcagcta
//
