LOCUS       XM_006246796            5042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rabaptin, RAB GTPase binding effector
            protein 1 (Rabep1), transcript variant X2, mRNA.
ACCESSION   XM_006246796
VERSION     XM_006246796.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246796.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246796.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5042
                     /gene="Rabep1"
                     /note="rabaptin, RAB GTPase binding effector protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 58 ESTs, 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 90 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54190"
                     /db_xref="RGD:708568"
     CDS             222..2588
                     /gene="Rabep1"
                     /codon_start=1
                     /product="rab GTPase-binding effector protein 1 isoform
                     X2"
                     /protein_id="XP_006246858.1"
                     /db_xref="GeneID:54190"
                     /db_xref="RGD:708568"
                     /translation="MAQPGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRA
                     KFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEA
                     IDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERAQWAQYRESADREIADLRRR
                     LSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVK
                     ELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQL
                     KHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRINKGKD
                     NKKIDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLLPSGDPFSK
                     SDNDMFKEGLRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSE
                     NFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYL
                     LVSETEWNLLQKEISALVLRAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSE
                     ELVRLQKDNDSLQGKHSLHVSLQLAEDFILPDTVQVLRELVLKYRENIVHVRTAADHM
                     EEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKG
                     QLESTLREKSQQLESLQEIKVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVS
                     EQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTKLTDINQLPET"
ORIGIN      
        1 cgcactgctt atttcccgct gtcaggatga ggaggcggag gtcggcgctc cggtccgtct
       61 ctgcccgagg ctgtggcggc gccagcggct ccagccttag cggttcctcc ctgggcggcg
      121 gcggccgcgg ctcggtcgac gcgttctccg ccagctgagt ccgccgcagc ccgggacgct
      181 gcttccccgc ccatccccgt tctccaggcc gcccactggc catggcgcag ccgggcccgg
      241 ctccccagcc tgacgtttct cttcagcaac gggtagcaga attggaaaaa attaatgcag
      301 aatttttacg tgcacagcag cagcttgagc aagaatttaa tcaaaagaga gcaaaattta
      361 aggagctgta tttggctaaa gaggaggatc tgaagcggca aaatgcagta ttgcaagctg
      421 cgcaggatga cttgggtcac cttcggacac agctgtggga ggcgcaggca gaaatggaga
      481 atatcaaggc gatcgccaca gtctctgaga acactaagca agaagctata gatgaagtta
      541 aaaggcagtg gagagaagaa gttgcttcac ttcaggctgt aatgaaagag actgtgcgtg
      601 actatgagca tcagtttcac ctgaggctgg agcaggaacg agcgcagtgg gcacagtatc
      661 gagagtctgc agaccgggag atagctgacc taagaagaag gttgtctgaa ggtcaagagg
      721 aagaaaattt agaaaatgaa atgaaaaagg cccaagagga tgccgagaag cttcgctctg
      781 tcgtgatgcc catggagaag gaaattgcag ccctgaaaga taaactgaca gaagctgaag
      841 acaagattaa agagctggag gcctcaaagg ttaaggaact gaatcattat ctggaggccg
      901 agaagtcttg caggactgat ctggagatgt atgtagctgt tttgaacacc cagaaatctg
      961 ttctacagga agatgctgag aaattgagga aagaactgca tgaagtttgc catctcttgg
     1021 agcaagagcg acaacaacac aaccagttaa aacacacgtg gcagaaggcc aacgaccagt
     1081 ttttggaatc tcagcgcttg ctgatgagag acatgcagcg aatggagatc gtgttaactt
     1141 cagaacagct acgacaagtt gaagaactga agaagaaaga tcaggaggag gatgaacaac
     1201 aaaggatcaa taagggaaaa gataacaaga aaatagacac tgaagaagaa gtaaaaatac
     1261 cagtagtatg tgctttaact caagaagaat cttcaacccc actatcaaat gaagaggagc
     1321 atttagacag cacccatggg tcagtccatt ccttagatgc agacttgctg ttaccatctg
     1381 gagatccatt cagtaaatcg gacaatgaca tgtttaaaga gggactccgg agagctcagt
     1441 ctacagacag cttgggaacc tcaagctcat tgcaatccaa agctttaggc tataactaca
     1501 aagcaaaatc tgctggaaat ttggatgagt cggattttgg accactggtt ggagcagatt
     1561 ctgtgtctga gaactttgat actgtgtccc ttgggtcact gcagatgcca agtggattta
     1621 tgttaaccaa agatcaagaa agagcaatta aggcaatgac acctgaacag gaggagacag
     1681 catccctcct ctcaagtgtc acacagggta tggagagtgc atatgtctct cctagtggtt
     1741 acctcttagt gagtgaaacg gaatggaatc tcctgcagaa agagatatct gcacttgttt
     1801 taagagccca agcctctgag gtattacttg aagagttaca acagagtttt tcccaagcaa
     1861 agagggatgt tcaggagcag atggcagtgc tgatgcagtc acgtgaacag gtctcagaag
     1921 agctggtgag gttacagaaa gacaatgaca gcctccaggg aaagcatagc ttgcatgtgt
     1981 cattacaact agcagaagac ttcattcttc cagatactgt gcaggtgctc cgggaactgg
     2041 ttttaaaata tcgtgagaac attgttcatg tgcggacagc agcagaccac atggaagaga
     2101 agctgaaggc tgaaatactt tttctaaaag agcaaattca ggcggaacag tgtttaaaag
     2161 aaaaccttga agagacatta cagctggaaa ttgaaaactg caaggaggaa atagcttcca
     2221 tttctagtct aaaagctgaa ttagaaagaa taaaagttga aaagggacag ttggaatcta
     2281 cattaagaga gaagtcgcaa caacttgaga gcctccaaga aataaaagtt aatttagagg
     2341 aacagttaaa gaaggaaact gctgctaagg ccactgttga acagctcatg tttgaagaga
     2401 agaacaaagc tcagaggttg cagacagaat tagatgtcag tgaacaagtc cagagagatt
     2461 ttgtaaaact ttctcagact cttcaggtgc agttagagag gatccggcaa gcagactccc
     2521 tggagaggat ccgggcaatt ctgaatgata ccaaactgac agacattaac cagctccctg
     2581 agacatgaca ccctgatggc aggattctga cctgcatttt gggtttttaa ctcatcttta
     2641 gaataacatt aattattatt taactcttaa tggaagaagt cacagcaaaa ggaggactgg
     2701 agaaatgcag ttctggaggg agaaggctgc tgtgtgcagg gacagccaac agacgtttca
     2761 aagggaacac taatgagaca ctggactcga ttccaacagg cgtgggatca gattgggtgc
     2821 cagaaaagtg ctgtttcctt gcctgcttcc tccagcgtgg actctggaac ataattcctg
     2881 ccatgaaagc aacttcccaa tagtgtttgg aattacgttt tctgttcata caaactggga
     2941 gagaaaagtt tctttctcct gtggtctggg gctcatcagt agcagtgttc agctagcaga
     3001 gaggtgtagt gcgctgtgtg agtattttat attaaaatgt ggagtgagag caggccattg
     3061 gctattgatt gtgtttccct tgctcaatgc attttgtttc ctttttaacc attccttcta
     3121 ttggaagacc ttaaatgcta ttgtaacttg cttgagaact ataggaccat ggcaaacaaa
     3181 agcaattaaa attaggagaa tctgaatctt tggctgaggc caatatatat tatatatata
     3241 tatcaattta tggaaaaaaa gcacaaataa ccttggaagc actttgtctg cacaccatga
     3301 tgaacttcct gggcccaaag gtaccagggc aaataactgg caccatctac cctttcgaag
     3361 tgttttagtt actggatcag tggaaaataa tactaataaa acaagctatc tctgacatct
     3421 agtacacatg tatagatctg cttattttca gcctgcctca gaggcatact atttagagtg
     3481 tcacatacag aatggtgatg gtttatagat ctttgtattt ttgttttgca gtttagacct
     3541 aaggtgtaag caactgtgct tacagtgagg ctgggaaact tacccatctg tttccccccc
     3601 cccccccccc ccttttccaa gggttgagat tcctttcctg tttggagaag cagccagtgg
     3661 aataggctgt tgagcagctt tctgaagtgg tggagaaagt agaagtgtgc tcatgtacta
     3721 gctgcaggct accccgagag cagccagtgc acagccaact atgctatttc actcatgcag
     3781 tttgaacata aaaatgtctt caagtaattt ttgtgagtag tgttggctta cagctggtaa
     3841 ggaacattat gggaataagt aaactagact tttctggctt aactaccatc acttcacagc
     3901 ataaatggac tttgttaatg aatcattatg aatttgccct caagatcttt gctattttct
     3961 tttaataaaa caggtaagga aagtctactt atcccatacc ataggttatt tttatagtca
     4021 tgatttatga atttaaaagt aaacatgaat tacagaaata ttgctaaaac cttgccaatg
     4081 catggaaaca ttggcttaaa gtccccttgt atacagtgct acttggttta aaaggaacat
     4141 aataccctca ttgagttaag gggactctat taattataac gtgattaagt tagatttaag
     4201 actagtccct aggccccaag ctgatttgtt tgaatcaccc ttggccacac tgaatggata
     4261 attcataagc atattgaacc gtgtctctcc ctccagtgaa ctgttctgcc gaaatcaagt
     4321 atcttacaga tcttttctcc tgaagctggg gattgaacag taaaagcatc atgattaggg
     4381 cactgtttac aagagtgtgt acttgtggca aatgtaaact ggtgggatcc actcatttga
     4441 gaaacacatc ccagaggaag agaaactgaa atgctaggtt ggatgaaata aactaatgct
     4501 acgccaccag gtaagaaaca gttctttaaa cttaagaaaa agttttctgc atagagatct
     4561 ggtttaggag gtgaattcac cgtgagagga aaggtcagcc tagtttcaca caccttcctg
     4621 tactgcattc agtctgtgta gacctgttct cttgcatgtc tgacctggct taactcttaa
     4681 actgtaacat accttattat gtggctttta aatggcagtc actttgtcgt ttctagacag
     4741 gtaccatact taacctttca gaactcaaat tggcaggtat gaaaagatga cctaaagcca
     4801 aggacaaact gtatgcaaca gaccacaatg ttccttttct tttaaggtgc tagaatttgc
     4861 acctcctacc caccaagtag acacagacat agccagcctg agctctggaa ggaagtgctg
     4921 gtgcccgtga ggacgcagct gtagaccgtc agctctgctc tgagcagagt gcaggttatc
     4981 gtgctgactg taccgaaggc atgccccgaa caaagtgttc acattaaagg agctgctgct
     5041 ga
//
