LOCUS       XM_006246795            5159 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rabaptin, RAB GTPase binding effector
            protein 1 (Rabep1), transcript variant X1, mRNA.
ACCESSION   XM_006246795
VERSION     XM_006246795.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246795.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006246795.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5159
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5159
                     /gene="Rabep1"
                     /note="rabaptin, RAB GTPase binding effector protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 59 ESTs, 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 92 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54190"
                     /db_xref="RGD:708568"
     CDS             222..2705
                     /gene="Rabep1"
                     /codon_start=1
                     /product="rab GTPase-binding effector protein 1 isoform
                     X1"
                     /protein_id="XP_006246857.1"
                     /db_xref="GeneID:54190"
                     /db_xref="RGD:708568"
                     /translation="MAQPGPAPQPDVSLQQRVAELEKINAEFLRAQQQLEQEFNQKRA
                     KFKELYLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEA
                     IDEVKRQWREEVASLQAVMKETVRDYEHQFHLRLEQERAQWAQYRESADREIADLRRR
                     LSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVK
                     ELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQL
                     KHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEEDEQQRINKGKD
                     NKKIDTEEEVKIPVVCALTQEESSTPLSNEEEHLDSTHGSVHSLDADLLLPSGDPFSK
                     SDNDMFKEGLRRAQSTDSLGTSSSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSE
                     NFDTVSLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYL
                     LVSETEWNLLQKEVKKLQLMLRQANDQLEKTMKEKQELEDFLRQSAEDSSHQISALVL
                     RAQASEVLLEELQQSFSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLH
                     VSLQLAEDFILPDTVQVLRELVLKYRENIVHVRTAADHMEEKLKAEILFLKEQIQAEQ
                     CLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEI
                     KVNLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLE
                     RIRQADSLERIRAILNDTKLTDINQLPET"
ORIGIN      
        1 cgcactgctt atttcccgct gtcaggatga ggaggcggag gtcggcgctc cggtccgtct
       61 ctgcccgagg ctgtggcggc gccagcggct ccagccttag cggttcctcc ctgggcggcg
      121 gcggccgcgg ctcggtcgac gcgttctccg ccagctgagt ccgccgcagc ccgggacgct
      181 gcttccccgc ccatccccgt tctccaggcc gcccactggc catggcgcag ccgggcccgg
      241 ctccccagcc tgacgtttct cttcagcaac gggtagcaga attggaaaaa attaatgcag
      301 aatttttacg tgcacagcag cagcttgagc aagaatttaa tcaaaagaga gcaaaattta
      361 aggagctgta tttggctaaa gaggaggatc tgaagcggca aaatgcagta ttgcaagctg
      421 cgcaggatga cttgggtcac cttcggacac agctgtggga ggcgcaggca gaaatggaga
      481 atatcaaggc gatcgccaca gtctctgaga acactaagca agaagctata gatgaagtta
      541 aaaggcagtg gagagaagaa gttgcttcac ttcaggctgt aatgaaagag actgtgcgtg
      601 actatgagca tcagtttcac ctgaggctgg agcaggaacg agcgcagtgg gcacagtatc
      661 gagagtctgc agaccgggag atagctgacc taagaagaag gttgtctgaa ggtcaagagg
      721 aagaaaattt agaaaatgaa atgaaaaagg cccaagagga tgccgagaag cttcgctctg
      781 tcgtgatgcc catggagaag gaaattgcag ccctgaaaga taaactgaca gaagctgaag
      841 acaagattaa agagctggag gcctcaaagg ttaaggaact gaatcattat ctggaggccg
      901 agaagtcttg caggactgat ctggagatgt atgtagctgt tttgaacacc cagaaatctg
      961 ttctacagga agatgctgag aaattgagga aagaactgca tgaagtttgc catctcttgg
     1021 agcaagagcg acaacaacac aaccagttaa aacacacgtg gcagaaggcc aacgaccagt
     1081 ttttggaatc tcagcgcttg ctgatgagag acatgcagcg aatggagatc gtgttaactt
     1141 cagaacagct acgacaagtt gaagaactga agaagaaaga tcaggaggag gatgaacaac
     1201 aaaggatcaa taagggaaaa gataacaaga aaatagacac tgaagaagaa gtaaaaatac
     1261 cagtagtatg tgctttaact caagaagaat cttcaacccc actatcaaat gaagaggagc
     1321 atttagacag cacccatggg tcagtccatt ccttagatgc agacttgctg ttaccatctg
     1381 gagatccatt cagtaaatcg gacaatgaca tgtttaaaga gggactccgg agagctcagt
     1441 ctacagacag cttgggaacc tcaagctcat tgcaatccaa agctttaggc tataactaca
     1501 aagcaaaatc tgctggaaat ttggatgagt cggattttgg accactggtt ggagcagatt
     1561 ctgtgtctga gaactttgat actgtgtccc ttgggtcact gcagatgcca agtggattta
     1621 tgttaaccaa agatcaagaa agagcaatta aggcaatgac acctgaacag gaggagacag
     1681 catccctcct ctcaagtgtc acacagggta tggagagtgc atatgtctct cctagtggtt
     1741 acctcttagt gagtgaaacg gaatggaatc tcctgcagaa agaggtgaaa aaactgcagt
     1801 taatgctcag gcaagctaat gaccagctag agaagacaat gaaagagaaa caggagctag
     1861 aggacttcct caggcagagt gccgaggact caagccacca gatatctgca cttgttttaa
     1921 gagcccaagc ctctgaggta ttacttgaag agttacaaca gagtttttcc caagcaaaga
     1981 gggatgttca ggagcagatg gcagtgctga tgcagtcacg tgaacaggtc tcagaagagc
     2041 tggtgaggtt acagaaagac aatgacagcc tccagggaaa gcatagcttg catgtgtcat
     2101 tacaactagc agaagacttc attcttccag atactgtgca ggtgctccgg gaactggttt
     2161 taaaatatcg tgagaacatt gttcatgtgc ggacagcagc agaccacatg gaagagaagc
     2221 tgaaggctga aatacttttt ctaaaagagc aaattcaggc ggaacagtgt ttaaaagaaa
     2281 accttgaaga gacattacag ctggaaattg aaaactgcaa ggaggaaata gcttccattt
     2341 ctagtctaaa agctgaatta gaaagaataa aagttgaaaa gggacagttg gaatctacat
     2401 taagagagaa gtcgcaacaa cttgagagcc tccaagaaat aaaagttaat ttagaggaac
     2461 agttaaagaa ggaaactgct gctaaggcca ctgttgaaca gctcatgttt gaagagaaga
     2521 acaaagctca gaggttgcag acagaattag atgtcagtga acaagtccag agagattttg
     2581 taaaactttc tcagactctt caggtgcagt tagagaggat ccggcaagca gactccctgg
     2641 agaggatccg ggcaattctg aatgatacca aactgacaga cattaaccag ctccctgaga
     2701 catgacaccc tgatggcagg attctgacct gcattttggg tttttaactc atctttagaa
     2761 taacattaat tattatttaa ctcttaatgg aagaagtcac agcaaaagga ggactggaga
     2821 aatgcagttc tggagggaga aggctgctgt gtgcagggac agccaacaga cgtttcaaag
     2881 ggaacactaa tgagacactg gactcgattc caacaggcgt gggatcagat tgggtgccag
     2941 aaaagtgctg tttccttgcc tgcttcctcc agcgtggact ctggaacata attcctgcca
     3001 tgaaagcaac ttcccaatag tgtttggaat tacgttttct gttcatacaa actgggagag
     3061 aaaagtttct ttctcctgtg gtctggggct catcagtagc agtgttcagc tagcagagag
     3121 gtgtagtgcg ctgtgtgagt attttatatt aaaatgtgga gtgagagcag gccattggct
     3181 attgattgtg tttcccttgc tcaatgcatt ttgtttcctt tttaaccatt ccttctattg
     3241 gaagacctta aatgctattg taacttgctt gagaactata ggaccatggc aaacaaaagc
     3301 aattaaaatt aggagaatct gaatctttgg ctgaggccaa tatatattat atatatatat
     3361 caatttatgg aaaaaaagca caaataacct tggaagcact ttgtctgcac accatgatga
     3421 acttcctggg cccaaaggta ccagggcaaa taactggcac catctaccct ttcgaagtgt
     3481 tttagttact ggatcagtgg aaaataatac taataaaaca agctatctct gacatctagt
     3541 acacatgtat agatctgctt attttcagcc tgcctcagag gcatactatt tagagtgtca
     3601 catacagaat ggtgatggtt tatagatctt tgtatttttg ttttgcagtt tagacctaag
     3661 gtgtaagcaa ctgtgcttac agtgaggctg ggaaacttac ccatctgttt cccccccccc
     3721 ccccccccct tttccaaggg ttgagattcc tttcctgttt ggagaagcag ccagtggaat
     3781 aggctgttga gcagctttct gaagtggtgg agaaagtaga agtgtgctca tgtactagct
     3841 gcaggctacc ccgagagcag ccagtgcaca gccaactatg ctatttcact catgcagttt
     3901 gaacataaaa atgtcttcaa gtaatttttg tgagtagtgt tggcttacag ctggtaagga
     3961 acattatggg aataagtaaa ctagactttt ctggcttaac taccatcact tcacagcata
     4021 aatggacttt gttaatgaat cattatgaat ttgccctcaa gatctttgct attttctttt
     4081 aataaaacag gtaaggaaag tctacttatc ccataccata ggttattttt atagtcatga
     4141 tttatgaatt taaaagtaaa catgaattac agaaatattg ctaaaacctt gccaatgcat
     4201 ggaaacattg gcttaaagtc cccttgtata cagtgctact tggtttaaaa ggaacataat
     4261 accctcattg agttaagggg actctattaa ttataacgtg attaagttag atttaagact
     4321 agtccctagg ccccaagctg atttgtttga atcacccttg gccacactga atggataatt
     4381 cataagcata ttgaaccgtg tctctccctc cagtgaactg ttctgccgaa atcaagtatc
     4441 ttacagatct tttctcctga agctggggat tgaacagtaa aagcatcatg attagggcac
     4501 tgtttacaag agtgtgtact tgtggcaaat gtaaactggt gggatccact catttgagaa
     4561 acacatccca gaggaagaga aactgaaatg ctaggttgga tgaaataaac taatgctacg
     4621 ccaccaggta agaaacagtt ctttaaactt aagaaaaagt tttctgcata gagatctggt
     4681 ttaggaggtg aattcaccgt gagaggaaag gtcagcctag tttcacacac cttcctgtac
     4741 tgcattcagt ctgtgtagac ctgttctctt gcatgtctga cctggcttaa ctcttaaact
     4801 gtaacatacc ttattatgtg gcttttaaat ggcagtcact ttgtcgtttc tagacaggta
     4861 ccatacttaa cctttcagaa ctcaaattgg caggtatgaa aagatgacct aaagccaagg
     4921 acaaactgta tgcaacagac cacaatgttc cttttctttt aaggtgctag aatttgcacc
     4981 tcctacccac caagtagaca cagacatagc cagcctgagc tctggaagga agtgctggtg
     5041 cccgtgagga cgcagctgta gaccgtcagc tctgctctga gcagagtgca ggttatcgtg
     5101 ctgactgtac cgaaggcatg ccccgaacaa agtgttcaca ttaaaggagc tgctgctga
//
