LOCUS       NM_001013922            1045 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus RAB5 interacting factor (Rab5if), mRNA.
ACCESSION   NM_001013922 XM_215904
VERSION     NM_001013922.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Moutaoufik MT, Malty R, Amin S, Zhang Q, Phanse S, Gagarinova A,
            Zilocchi M, Hoell L, Minic Z, Gagarinova M, Aoki H, Stockwell J,
            Jessulat M, Goebels F, Broderick K, Scott NE, Vlasblom J, Musso G,
            Prasad B, Lamantea E, Garavaglia B, Rajput A, Murayama K, Okazaki
            Y, Foster LJ, Bader GD, Cayabyab FS and Babu M.
  TITLE     Rewiring of the Human Mitochondrial Interactome during Neuronal
            Reprogramming Reveals Regulators of the Respirasome and
            Neurogenesis
  JOURNAL   iScience 19, 1114-1132 (2019)
   PUBMED   31536960
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089919.1.
            
            On Apr 20, 2005 this sequence version replaced XM_215904.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089919.1, FQ212871.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1045
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /note="RAB5 interacting factor"
                     /db_xref="GeneID:296315"
                     /db_xref="RGD:1307752"
     exon            1..269
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..545
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /note="RAB5-interacting protein"
                     /codon_start=1
                     /product="GEL complex subunit OPTI"
                     /protein_id="NP_001013944.1"
                     /db_xref="GeneID:296315"
                     /db_xref="RGD:1307752"
                     /translation="MSGGRRKEEPPQPQLANGALKVSVWSKVLRSDAAWDDKDEFLDV
                     IYWFRQIIAVVLGVIWGILPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEYGGTWE
                     LTKEGFMTSFALFMVIWIIFYTAIHYD"
     exon            270..373
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /inference="alignment:Splign:2.1.0"
     exon            374..503
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /inference="alignment:Splign:2.1.0"
     exon            504..1022
                     /gene="Rab5if"
                     /gene_synonym="RGD1307752"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttggcaga gcgagcggaa cctcggcgtg ccacggtatc tcacagccta gactgtcgct
       61 gccgccccgc gcgccgagac ccgccatccc agaccccgac tccctttggc tcggcccgcg
      121 cgccccacgc ccagctcggg cggcgcgacg ggaggatgag cggcgggcgg cggaaagagg
      181 agccgcctca gccgcagcta gccaacgggg ccctcaaggt gtccgtgtgg agcaaggtgc
      241 tgcggagcga cgcggcctgg gacgacaagg atgaattttt agatgtgatc tactggttcc
      301 gacagatcat cgctgtggtt ttgggtgtca tttggggcat tttgcccttg cgaggcttct
      361 tgggaatagc aggattctgc ctgatcaatg caggagtcct gtatctctac ttcagcaact
      421 acctacagat cgacgaggaa gagtatggtg gtacatggga gctcaccaaa gaagggttta
      481 tgacgtcatt tgccttgttc atggtcattt ggatcatctt ttacactgcc atccactatg
      541 actgatggca tttgctcccg tcccttctgt ccagtccaaa ggaccctttt attacagcac
      601 agatacatgc ttattggggc actcctgctg tgtggaaccg agaagaccca gtctcctgga
      661 cttagaatca gcgtgttggg catcagtgtt ttcctgcaag ggttgtgaaa ctttttaaag
      721 aaccatccac ctttggggaa gcatttctga gtttgtccat tgtcaacaat ctgtccttgg
      781 ataccatcat gtaacagctg tttgccaagt ggagctgctg ttgaatctga tgcgcctctg
      841 gatccggatg aaacattgtc ttccttggtt ctccgtcagg tgtacagttt ttaaacatca
      901 ctgcatctca agtcttctga aaacaccatg tgcgtggtcc atggtacaat acaagcagcc
      961 atctactaag ttccattgta ggatgttttc agatacttga ataaacaaat ctttaactga
     1021 aaaaaaaaaa aaaaaaaaaa aaaaa
//
