LOCUS       NM_001399815            1239 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus RAB42, member RAS oncogene family (Rab42), mRNA.
ACCESSION   NM_001399815 XM_008764194
VERSION     NM_001399815.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 14, 2022 this sequence version replaced XM_008764194.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.24622.1,
                                           SRR26643429.21121.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-245               JAXUCZ010000005.1  149782607-149782851 c
            246-1239            JAXUCZ010000005.1  149781181-149782174 c
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1239
                     /gene="Rab42"
                     /note="RAB42, member RAS oncogene family"
                     /db_xref="GeneID:682865"
                     /db_xref="RGD:1593983"
     exon            1..245
                     /gene="Rab42"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..666
                     /gene="Rab42"
                     /note="putative Ras-related protein Rab-42"
                     /codon_start=1
                     /product="ras-related protein Rab-42"
                     /protein_id="NP_001386744.1"
                     /db_xref="GeneID:682865"
                     /db_xref="RGD:1593983"
                     /translation="MEAAGCSYQFRIALLGDAAVGKTSLLRCYVAGARGAAELDPEPT
                     VGVEFYSRALRLPAGLRVKLQLWDTAGQERFRCITRSFYRNMVGVLLVFDVTNRESFE
                     HIQAWHQEVISTHGSDKVIFLLVGHKCDLSTRCVSTQEAEELAASLGMAFVETSAKSN
                     CNVDLAFDTVTSAIEQALQQGDIKLEEDWAGVRLLHRAPNPRSSSRKQDSGPCQC"
     exon            246..1239
                     /gene="Rab42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggggagct cagatcccat ggaggcggca ggctgcagct accaatttcg gatcgcgctg
       61 ctcggggacg cggcagtggg caagacgtca ctgctgcggt gttacgtggc gggcgcgcgg
      121 ggggcagcgg agctggatcc cgaacccact gtgggcgtgg agttctacag ccgcgcgctg
      181 cggctgcccg ctgggctgcg ggtcaagctg cagctctggg acaccgcagg ccaagagcgc
      241 ttcaggtgca tcaccagatc cttctaccgg aacatggtgg gcgtcctgtt ggtctttgat
      301 gtgacgaaca gagagtcctt tgaacacatc caagcctggc accaggaggt catatccact
      361 catggctctg acaaggtgat cttcttactg gttggccaca agtgcgacct gagcacccga
      421 tgtgtctcca ctcaggaggc ggaggaactt gctgcctccc tgggcatggc ctttgtggag
      481 acctcagcca aaagtaactg caatgtggac ctggcctttg acactgtcac cagcgccatc
      541 gaacaggccc tgcagcaggg ggacatcaaa ctggaagagg actgggcagg tgtccggctc
      601 ctccatagag ccccaaaccc tagatcctcc agcaggaagc aggactcagg cccatgccag
      661 tgttgactcc aggagagaaa gggttaacca gagccgtggt taaccagtgg ttccaggtga
      721 gataggaggg caacagacaa aaagactcct agcagtctcc tgacatgtcc ctgccatcta
      781 attcttggat ttttcaagat tgaacacagg gtttagctac agagagcccc aacccttttc
      841 tattttcaga gtggatcttg ataaattgcc caggctggcc ttgaactagt aaccttcttg
      901 agtgattgag attacagaag tgtaccacta ggccagaacc tctcctgggt ttttagttct
      961 cagcacaact cctttctaga gggagagtct aagatcaggt atgtgactta ttgtgacttg
     1021 ggggcactgg ctgttcttcc agtgcatcag gctacacaca aagaccaata gggacaggct
     1081 tgccccacca cagcctgtct aattgacagg tgagtggtaa tattcttctt ctgggcttct
     1141 ttctcggctt ccacaagctt atttctggca gcatatctgg gctggaagac agattcccag
     1201 tatctgtcca ctgctttgct ggcaaggtag tctggggaa
//
