LOCUS       NM_182675               2499 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Rab40c, member RAS oncogene family (Rab40c),
            mRNA.
ACCESSION   NM_182675 XM_006245981
VERSION     NM_182675.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Rodriguez-Gabin,A.G., Almazan,G. and Larocca,J.N.
  TITLE     Vesicle transport in oligodendrocytes: probable role of Rab40c
            protein
  JOURNAL   J Neurosci Res 76 (6), 758-770 (2004)
   PUBMED   15160388
  REMARK    GeneRIF: A novel Rab protein, Rab40c, was cloned from an
            oligodendrocyte cDNA library. Rab40c is localized in the
            perinuclear recycling compartment, suggesting its involvement in
            endocytic events such as receptor recycling.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Oct 29, 2022 this sequence version replaced
            XM_006245981.4, NM_182675.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.33367.1, EV778902.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                JAXUCZ010000010.1  15440601-15440659   c
            60-244              JAXUCZ010000010.1  15440314-15440498   c
            245-305             JAXUCZ010000010.1  15415346-15415406   c
            306-366             JAXUCZ010000010.1  15414666-15414726   c
            367-444             JAXUCZ010000010.1  15408365-15408442   c
            445-667             JAXUCZ010000010.1  15407910-15408132   c
            668-2499            JAXUCZ010000010.1  15405436-15407267   c
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..2499
                     /gene="Rab40c"
                     /note="Rab40c, member RAS oncogene family"
                     /db_xref="GeneID:359728"
                     /db_xref="RGD:727914"
     exon            1..59
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     exon            60..244
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..948
                     /gene="Rab40c"
                     /note="localized in perinuclear recycling compartment"
                     /codon_start=1
                     /product="ras-related protein Rab-40C"
                     /protein_id="NP_872616.1"
                     /db_xref="GeneID:359728"
                     /db_xref="RGD:727914"
                     /translation="MGTQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYA
                     YSNGIDYKTTTILLDGRRVKLELWDTSGQGRFCTIFRSYSRGAQGILLVYDITNRWSF
                     DGIDRWIKEIDEHAPGVPRILVGNRLHLAFKRQVPTEQARAYAEKNCMTFFEVSPLCN
                     FNVIESFTELSRIVLMRHGMEKIWRPNRVFSLQDLCCRAIVSCTPVHLIDKLPLPVTI
                     KSHLKSFSMANGMNAVMMHGRSYSLASGAGGSGSKGNSLKRSKSIRPPQSPPQNCSRS
                     NCKIS"
     exon            245..305
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     exon            306..366
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     exon            367..444
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     exon            445..667
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
     exon            668..2499
                     /gene="Rab40c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgggaagc ggcgggcggc ggcggcggcg gcggtagcag cggcggctag gaggctgagg
       61 tctggcggcg gtgccgtggg ccgcggtgcg gcgggcggga ggatgggcac ccagggcagt
      121 ccagtgaaga gctacgatta cctgctcaag ttcctgctgg tgggcgacag cgacgtgggc
      181 aaaggcgaga ttctggagag tcttcaggac ggagcagccg aatccccgta cgcctacagc
      241 aacggaatag actataagac taccaccatc ctactagatg gacggcgtgt caagctggag
      301 ctatgggata cttcgggcca gggaaggttc tgtaccatct tcaggtccta ctcgaggggt
      361 gcgcagggaa tccttctggt gtacgacatc accaaccgtt ggtcctttga tggcattgac
      421 cggtggatca aggagattga tgagcatgca cctggtgttc cccggatcct ggttggaaac
      481 cggctgcacc tcgccttcaa gcggcaagtc ccaacggagc aggccagagc ctacgcagag
      541 aagaactgca tgaccttctt tgaagtcagc ccgctgtgca acttcaacgt cattgagtcc
      601 ttcactgagc tctcccgcat tgtgctcatg cggcatggca tggagaagat ctggaggccc
      661 aatcgagttt tcagcctgca ggacctctgc tgccgtgcca ttgtctcctg tactcctgtg
      721 cacctcatcg acaagctccc tctacctgtc accatcaaga gccacctcaa gtccttttcc
      781 atggccaacg gcatgaatgc tgtcatgatg cacggccgct cctactccct ggcaagtggg
      841 gccgggggca gtggcagcaa gggcaacagc cttaagaggt ccaagtccat ccgtcccccc
      901 cagagcccac ctcagaactg ctctcggagc aactgcaaga tctcctagcg ggacctgtgg
      961 gttccgcctg ttcagacttg gggcttacgc tggagcactc ctggccaggc gctaggccct
     1021 gctgcgtgca ggaagacttg gctacacaac cttgcctggg tctctccagg cttccctcca
     1081 catctgagct agtggagggg aggggcgtgc aggagagaat acgctccgct aaccaggcag
     1141 cagggctgct ggtgctacgg gggccaggtg tgaaccagtc ctggactcca ggctggaagt
     1201 gagcctggct cccctttatt tatatggaga acattttacc tgttttgtac atttttaaag
     1261 ggctgtcagg gaagcctgga tgcccctcat agccacatca gccgttgggg aagctcagga
     1321 cgtcagggaa ggaaggacga agcagcgatg gagggcttca gtgttgaagc cagatgatcc
     1381 ttggatttgc tcagatttgg gtgttgctca gaggccagtg gggaacagat ggggccaggg
     1441 tgtagttcag atgcttctag cagcaggctt ggccctagct tccatatctg acagaggtga
     1501 tcagtaccct gggcataggc aaggtttcag ctctgagacc tcctaggagc cgagggaagc
     1561 tggtgcacct tgggaaagcc ccacttccca ttgtgcccgg cacttttggt gatgtttact
     1621 atgcacatct ccggcggagg ctacagagct tccggtagac ttagtgcttg gtggccccta
     1681 ggatctgggc ttggggcaca gggcctagga ccccagcgtc taccagcttg tactcctcaa
     1741 ccttgctgtg ttttatggct gctccttgcc tattgtgacc cttctgcctt taagttcacg
     1801 tcactggaat ttcttagtga cactctggaa aagaggcctc aaccttaggg gtgaacacca
     1861 agccctcctt agggactcac tagaccgagc tacttctaaa gaagccatgg actatattct
     1921 tccacaatgc tccgcctatc ccagtctgct ctggttagcc tttcccctgt ggggatgttg
     1981 tccccaatgg atgtcctgtg tgaccactcc ctgtccttgc ctggtgacac agccctcagg
     2041 cacgctggtg cttaactcta cctcttgccc tcagggtcct ggctataaca ggagccatga
     2101 ccccttgctg gggacctctt agtgcacatt tcctaagacc atctttgcca tggatgttac
     2161 tagggcactg gtagacactg cgccagcctg cagttctggg agattgggtt aatgcctgta
     2221 gtgggggaca gggctgtggt tgtgggaact gcctgataag cagtggcccc tgggaccctg
     2281 gcccagaggc tggatacaat caagcatcac cttcccccac cagtcctgtt gttgttgaca
     2341 gagacctttt ctctggagtc gcgaatagaa tggtatagac tgtgaggact tggattggcc
     2401 tgcgtgcaca ccatcaacac tacacttgct gctgtggact ccaccattcc tggttctttg
     2461 ttcttacttc tttgtacagt aaatgtactt cagcagtga
//
