LOCUS       NM_134411               4910 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RAB3A interacting protein-like 1 (Rab3il1), mRNA.
ACCESSION   NM_134411
VERSION     NM_134411.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4910)
  AUTHORS   Fragoza,R., Das,J., Wierbowski,S.D., Liang,J., Tran,T.N., Liang,S.,
            Beltran,J.F., Rivera-Erick,C.A., Ye,K., Wang,T.Y., Yao,L., Mort,M.,
            Stenson,P.D., Cooper,D.N., Wei,X., Keinan,A., Schimenti,J.C.,
            Clark,A.G. and Yu,H.
  TITLE     Extensive disruption of protein interactions by genetic variants
            across the allele frequency spectrum in human populations
  JOURNAL   Nat Commun 10 (1), 4141 (2019)
   PUBMED   31515488
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4910)
  AUTHORS   Yoshimura,S., Gerondopoulos,A., Linford,A., Rigden,D.J. and
            Barr,F.A.
  TITLE     Family-wide characterization of the DENN domain Rab GDP-GTP
            exchange factors
  JOURNAL   J Cell Biol 191 (2), 367-381 (2010)
   PUBMED   20937701
REFERENCE   3  (bases 1 to 4910)
  AUTHORS   Luo,H.R., Saiardi,A., Nagata,E., Ye,K., Yu,H., Jung,T.S., Luo,X.,
            Jain,S., Sawa,A. and Snyder,S.H.
  TITLE     GRAB: a physiologic guanine nucleotide exchange factor for Rab3A,
            which interacts with inositol hexakisphosphate kinase
  JOURNAL   Neuron 31 (3), 439-451 (2001)
   PUBMED   11516400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 5, 2020 this sequence version replaced NM_134411.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.5284.1,
                                           SRR26643290.5272.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               JAXUCZ010000001.1  216087904-216088010
            108-363             JAXUCZ010000001.1  216096285-216096540
            364-459             JAXUCZ010000001.1  216096933-216097028
            460-537             JAXUCZ010000001.1  216097109-216097186
            538-753             JAXUCZ010000001.1  216097951-216098166
            754-882             JAXUCZ010000001.1  216099594-216099722
            883-980             JAXUCZ010000001.1  216099811-216099908
            981-1080            JAXUCZ010000001.1  216101814-216101913
            1081-1147           JAXUCZ010000001.1  216103141-216103207
            1148-4910           JAXUCZ010000001.1  216103847-216107609
FEATURES             Location/Qualifiers
     source          1..4910
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..4910
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /note="RAB3A interacting protein-like 1"
                     /db_xref="GeneID:171452"
                     /db_xref="RGD:619764"
     exon            1..107
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..1230
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /note="guanine nucleotide exchange factor for Rab3A;
                     rabin3-like 1; rab3A-interacting-like protein 1;
                     rab-3A-interacting-like protein 1; RAB3A interacting
                     protein (rabin3)-like 1"
                     /codon_start=1
                     /product="guanine nucleotide exchange factor for Rab-3A"
                     /protein_id="NP_599238.1"
                     /db_xref="GeneID:171452"
                     /db_xref="RGD:619764"
                     /translation="MWSGPPQQDEGLPVGLSAISVPWKNLGPSKGNRKSPGGLVEASA
                     SWEEAGGEEHPAAAPLDVSRLRSSSMEIREKGSEFLKEELYKAQKELKLKDEECERLC
                     KVRAQLEQELEELTASLFEEAHKMVREANMKQAASEKQLKEAWGKIDMLQAEVTALKT
                     LVITSTPASPNRELHPQLLSPTKAGPRKGHSRQKSTSSLCPVVCPTAGHIPTPDKEGK
                     EVDTTLFAEFQAWRASPTLDKNCPFLERVYREDVGPCLDFTVQELSALVRTAVEDNTL
                     TIEPVASQTLPNVECNNTNTCALSGLARTCHHRIRLGDSDGHYYISPSSRARITAVCN
                     FFTYVRYIQQGLVRQDAEPMFWEIMRLRKGMSLAKLGFFPQEA"
     exon            108..363
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            364..459
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            460..537
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            538..753
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            754..882
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            883..980
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1080
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1147
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..4910
                     /gene="Rab3il1"
                     /gene_synonym="Grab"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agactggcgg aggagcgatt gacaggcggc agggcagctc tggggcccgg cagagttggt
       61 ggtgcgcgtg gacgcggctg cggcggagac ctcgggatgt ggagcggccc accccaacaa
      121 gacgagggcc tccctgtggg cctctcagct atttcagtcc cctggaaaaa cctgggcccc
      181 agcaaaggta acaggaagtc cccaggaggc ctggtagaag cctctgcttc ctgggaggag
      241 gccgggggtg aggaacaccc agcagctgct ccattggatg tatcacgcct gcgcagctcc
      301 tccatggaga tccgagagaa gggctctgaa ttcctaaagg aggagctata caaagcccag
      361 aaggagctga agcttaagga tgaagagtgt gaacggcttt gcaaagtgcg cgcacagctg
      421 gagcaggagc tggaggagct gacggccagc ctgtttgagg aagctcacaa gatggttcgg
      481 gaagccaaca tgaagcaggc agcatcggaa aagcagttga aggaggcttg gggcaagatc
      541 gacatgctac aggcagaggt gacagccttg aagacactgg tcatcacatc cacaccagcc
      601 tctcccaacc gtgagctcca cccacagctg ctgagtccca ccaaagccgg accccgaaag
      661 ggccactcac gccaaaagag caccagctcc ctctgccctg ttgtgtgccc cactgcaggg
      721 catatcccca ccccagacaa agaaggcaag gaggtggata caaccctgtt tgcagagttc
      781 caggcttgga gggcatcacc taccctggat aagaactgcc ccttcctaga aagggtgtac
      841 cgggaggacg tgggcccttg cctcgacttc acagtgcagg agctctcagc tctagttcgg
      901 acggcagtgg aggacaacac actcaccatt gagcccgtgg cttcacagac tctgcccaat
      961 gttgagtgta acaacaccaa cacatgtgcc ctgagtggac tggcgcgtac ctgccaccat
     1021 cgaatccgcc tgggggactc tgacggccac tattacatct caccgtcctc ccgggccagg
     1081 atcactgcag tatgcaactt cttcacctat gtgcgttaca tccagcaagg cctggttcgg
     1141 caagatgctg agccgatgtt ctgggagatc atgaggctgc ggaaggggat gtcactagcc
     1201 aagcttggct tcttccccca ggaggcctag ggcatggccc caggcctgaa gtaagctctg
     1261 agctagagaa aacagctgcc ttgggacaga cgaacaagaa atcctggacc cagctctgag
     1321 ccataagctg aaaggacaga taaacagcca gactgtagag acagttctga gccagtacca
     1381 cccatccctc ttgggacaga caaaaggaca gcctggcctg gactttatga gatgacccct
     1441 cttgcccact aagctctgta gccaacaaga gaatctcaag aaagcaccga agaccaaggc
     1501 acttggaaca aggagctcag ccccaggaga ggacgtttga gtatccagta cccccaccac
     1561 aacccctgct gcttaccaat gctttcttgc tgccacatct tcagaaaggg actgttctag
     1621 ggtggctgga tctccagggt gtgctctacc acagcctcta agccctggga caccagcacc
     1681 cccttgtggc cattttctca ctgttcccaa gtggcctcat tagaatgccc aagtggtcag
     1741 gcaagtgtct ccattctgaa caaggtggag gataactgcc ccagaatgct ctgaaggtga
     1801 gtccagggtc cctcctccat tcttctgcat agaggcctcc ctctcccctt cctctccact
     1861 tcaacaccat cttcaggaag ccctgttcct aaaattgcca ggaatctggg tcctttcttc
     1921 tcagagtatg tcaccagagg aacctgagga tgtagacctg ggcagccatc caggctgtag
     1981 gggccctgtg tgtgggactg gatggagagg gcgggccaag caggacatgg accctacctt
     2041 atccatccca gcccactggg aagtggggtc gggggaccca gcctggacat acccctcacc
     2101 acgccctctt tccttcaaat ggaatgtaac acgatctcta tttaataaag gaaggctttg
     2161 ttggtagggg ctaggcggca gtggccttca ctcctgtgcc ctggggctct ggccagggct
     2221 tgggcatctg aaggaatgaa atcaaatcct ttcctgactg gcctcgtgct tgggattaaa
     2281 cccaaatcct gaaactgccc ccacggctac taccactttc ttgcagtagg gaagactgtt
     2341 ggagctgtcc ttaacttttc atggggctgt gggggattgg catgagtttg ccactctcag
     2401 ggttcagctc tgacctgtga atcccccagc ccttagagat gaccccaagt ctactagaat
     2461 cctggagtca aaacatccat gcttcctggg cttggcagga cagtgcatta attgatgcca
     2521 cctgtcacag gtcaggtggg gactccagaa gtgctaggca tggcagacac gagtggaaag
     2581 aagtagggat aagcagggtc ctgagagacc tcagagtagg actgaggaga gagaggtcgt
     2641 gtggttcctg ctcctgccca accagtaggg ctttgtgctt tcttgggagg agggtgcagc
     2701 agattctggg ttgggtcaga ggttgtcagg ggcctacgga aacttctcta ttggcctgag
     2761 gcccaggtgc attcagacgg tagttagctg ggggctggcc agagctctgt caaggtcctc
     2821 tgccttcaca tgttctctgg ccagtagcct gttcccagga ctctgctacc tccactgctc
     2881 ctcacatttc ctccctgctc cactgtgact cgagtccttt gctgtgtccc cagccctcaa
     2941 agacacctgg tcactgacca gaaccctgtc atagccactt attcactaac taatactggg
     3001 gtctcctctg ctggacattg gccatgacaa gcataccaat aatacatcca ggctcctgga
     3061 tggaggaaag taaaaaccaa agggtgtcag ggaaggacat ggtatactgt atggcatccc
     3121 atgattatgt catccccttg ttcaccgggg gacaagtggg gatcaaaacc tgagcactgg
     3181 acttaatcag tccctaactt ctgtgttctg agcccaacca tatgcaggac cacagaggta
     3241 ccaggagaca tcccagaagc tcatggagga ccctactccc ctgactgact tgtcctactt
     3301 ctacaaagca ttggccatga taggatccca ggtggagcca tcaacacagc cataccctgc
     3361 tggcagcaat taatatctaa gcactagtca tagctcccag ccctctctgt gaacccatta
     3421 tttcagcctc ttagcgatgt taaaacacgc tattatcccc tatgtaaatg gatagaggcc
     3481 actggagaac acagagatcc tgaagttggg gtttatttac ctcaatggta gaggctggcc
     3541 tagcaaacat aaggccctac cctgctccag aaaaagaaag tcacaaagag gtggtaagtc
     3601 tctgggactt gtagtattaa ccacctcttg gtgttttttg tttgtttgct tttgtgtttt
     3661 tatactgaac actcagtgtg tgtaggcttt tttttttttt tacctctttt aattgattca
     3721 aaaggatggg ggggtagatc agtgctagag tgcttaattc aaggcctggg gtttgatccc
     3781 cagaaccaca cacacaaaac agaagaaaca gagacagggc tggaatttga acctggtttc
     3841 ctttactctg gaagtggtag ctcagggctt tgacacttgg cgctgacttg ggaggctaac
     3901 tgccacacca gttcttacat tttctagata acccacttgg tttctatgaa ttcttggcac
     3961 ataggaatca tttgagctct ccttagccag ccctgaattt ggtgcagcac cctgagataa
     4021 ttcacttcac catcagccct gatctgaatc ctgccagggc tgtgaccttg gagcaagttg
     4081 cttttctcag ttatgaattg ggattattat ttttctccat aatcttccct cgttcgttcg
     4141 ttcgttcatt cattcattcg ttcgttcata catgcatgca tttggtgttt gagttgtgca
     4201 ttcatgatat tgtcttggtc cttgtttgag gcagagtctc tcattgtctg ttgatgcata
     4261 ggccagccta gcttctgaga attctcccac cttcccacta ggagcatagg gattatgggc
     4321 atggactact gggtcaagct ttttaagatt tctgtggatc tggactcagg ccatcagact
     4381 ttgacaggaa gtcctttttc cacaaatcaa tccctgccgt acttattttt tttttaaaca
     4441 caatcttgtc atacgtttta agtgtagaat tatagttctg ttaggcatag gcatactctc
     4501 acactgtcat gaagccaatc tgcaaacatt ttgcatcttt caaaacaaat gctctgtcca
     4561 ctgaataatt ccctatttct cctgtcccta gactgtggtc ctcagcatct tgccttctgc
     4621 ctctgtgaat ctgactcctc tggagatttg ctgtagatgc aatcagcaag attgatctct
     4681 tagtggctgg cttgtctcac ttaatgtaat gtcaatatgc gtctgtgttg taagatgaca
     4741 ggatttcctt tttaagactt agtaatattc tgatgtatgt gtaacacccc tctgtgttta
     4801 tccattcact ggagacagac atgggttact ggtacctact gatgcatatg ctaatatccc
     4861 ttggagagct tgcatagaat ccttttaata aatgaccatt agtaaattgg
//
