LOCUS       NM_001399548            4063 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus RAB11 family interacting protein 5 (Rab11fip5),
            mRNA.
ACCESSION   NM_001399548 XM_039108724
VERSION     NM_001399548.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4063)
  AUTHORS   Carson,B.P., Del Bas,J.M., Moreno-Navarrete,J.M.,
            Fernandez-Real,J.M. and Mora,S.
  TITLE     The rab11 effector protein FIP1 regulates adiponectin trafficking
            and secretion
  JOURNAL   PLoS One 8 (9), e74687 (2013)
   PUBMED   24040321
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4063)
  AUTHORS   Oehlke,O., Martin,H.W., Osterberg,N. and Roussa,E.
  TITLE     Rab11b and its effector Rip11 regulate the acidosis-induced traffic
            of V-ATPase in salivary ducts
  JOURNAL   J Cell Physiol 226 (3), 638-651 (2011)
   PUBMED   20717956
REFERENCE   3  (bases 1 to 4063)
  AUTHORS   Sugawara,K., Shibasaki,T., Mizoguchi,A., Saito,T. and Seino,S.
  TITLE     Rab11 and its effector Rip11 participate in regulation of insulin
            granule exocytosis
  JOURNAL   Genes Cells 14 (4), 445-456 (2009)
   PUBMED   19335615
REFERENCE   4  (bases 1 to 4063)
  AUTHORS   Trost,M., English,L., Lemieux,S., Courcelles,M., Desjardins,M. and
            Thibault,P.
  TITLE     The phagosomal proteome in interferon-gamma-activated macrophages
  JOURNAL   Immunity 30 (1), 143-154 (2009)
   PUBMED   19144319
REFERENCE   5  (bases 1 to 4063)
  AUTHORS   Chen,D., Xu,W., He,P., Medrano,E.E. and Whiteheart,S.W.
  TITLE     Gaf-1, a gamma -SNAP-binding protein associated with the
            mitochondria
  JOURNAL   J Biol Chem 276 (16), 13127-13135 (2001)
   PUBMED   11278501
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 12, 2022 this sequence version replaced XM_039108724.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2896627.1,
                                           SRR26643293.23760.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN09345238 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-538               JAXUCZ010000004.1  119465676-119466213 c
            539-975             JAXUCZ010000004.1  119442086-119442522 c
            976-1660            JAXUCZ010000004.1  119441319-119442003 c
            1661-1850           JAXUCZ010000004.1  119431224-119431413 c
            1851-4063           JAXUCZ010000004.1  119428766-119430978 c
FEATURES             Location/Qualifiers
     source          1..4063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..4063
                     /gene="Rab11fip5"
                     /note="RAB11 family interacting protein 5"
                     /db_xref="GeneID:312502"
                     /db_xref="RGD:1592069"
     exon            1..538
                     /gene="Rab11fip5"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..2054
                     /gene="Rab11fip5"
                     /note="RAB11 family interacting protein 5 (class I)"
                     /codon_start=1
                     /product="rab11 family-interacting protein 5"
                     /protein_id="NP_001386477.1"
                     /db_xref="GeneID:312502"
                     /db_xref="RGD:1592069"
                     /translation="MALVRDDEPAAGSSRWLPTHVQVTVLRASGLRGKSSGAGSTSDA
                     YTVIQVGREKYSTSVVEKTQGCPEWCEECSFELPPGALDGLLRAQETDAGPAPWASGP
                     NAACELVLTTMHRSLIGVDKFLGRATVALDEVFRAGRAQHTQWYKLHSKPGKKEKERG
                     EIQVTIQFTRNNLSASMFDLSMKDKPRSPFSKLKDKVKGKKKYDLESASAILPSSALE
                     DPELGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSTSGSLVYQGPGAELLT
                     RSPSHSSWLATEAGRDSIQSPKLLTHKRTYSDEASQLRAAPPRALLELQGHLDGASRS
                     SLCVNGSHVYNEEPQPPLRHRSSISGPFPSSSLHSVPPRSSEEGSRSSDDSWVRGSHG
                     TSSLEAVPGQEELSKQTKVLAPGASCSAEEEGTRPPEGKPVQVATPMVASSEAIAAEK
                     ERKPRMGLFHHHHHQGLSRNEVGRRGSVGEKGSPSLGASPHHSSTGEEKAKSSWFGLR
                     ESKEPTQKPSPHPVKPLTAAPVEASPDRKQSRTSLSTALSSGLERLKTVTSGGIQSVL
                     PASQLGSTVDTKRLKDSAVLDQSAKYYHLTHDELIGLLLQRERELSQRDEHVQELESY
                     IDRLLVRIMETSPTLLQISPGPSK"
     exon            539..975
                     /gene="Rab11fip5"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1660
                     /gene="Rab11fip5"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1850
                     /gene="Rab11fip5"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..4063
                     /gene="Rab11fip5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccatcccg cagctgcggc ggtccgtacg ctgcaggcgg cgcggggagc cggctcctga
       61 cagcatcccg cggctgccac gtctatcact gggtcccagg gtccaccatg gccctggtgc
      121 gggacgatga accggcggcc gggtcctccc gctggctgcc cacgcacgtc caggtgaccg
      181 tgctgcgggc cagcgggttg aggggcaaga gctcgggcgc cggcagcacc agcgacgcgt
      241 acacggtgat ccaggtgggc cgagagaagt acagcacctc ggtggtggag aagacgcaag
      301 gctgcccgga atggtgcgaa gagtgttcgt tcgagctgcc gcccggcgcc ctggacggcc
      361 tcctgcgggc acaggagaca gatgcgggcc ctgcgccctg ggcctccggt cccaacgccg
      421 cctgcgaact cgtgcttacc accatgcacc gctcgctcat cggtgtggac aagtttctag
      481 gccgggcaac cgtagctctg gacgaggtct ttcgcgcagg ccgcgcccag cacacgcagt
      541 ggtacaagct acactctaag ccaggcaaga aggagaagga gcgtggtgag atccaggtga
      601 ccatccagtt cacacggaac aacctgagcg ccagcatgtt tgatctctcc atgaaggaca
      661 agccacggtc tcccttcagc aagctcaagg acaaagtgaa gggcaagaag aagtatgacc
      721 tcgaatctgc ctcagccatc cttcctagca gtgccctgga ggaccccgag ttaggcagcc
      781 tgggcaagat gggcaaagcc aaaggcttct tcctccgcaa caaactccgc aagtcctcgc
      841 tcacacagtc caacacctct ctgggctccg acagcaccct gtcctccact agtggcagtc
      901 tggtctacca gggccctggg gcagagctgc tcacccgctc accaagccac agcagctggc
      961 tagccactga agcgggaagg gactctatac agtcccccaa gctgctcact cacaagagga
     1021 catacagtga cgaggccagc cagcttcgag cagctcctcc ccgggccctt cttgagctcc
     1081 aaggccacct cgatggagcc tcccgctcgt ccctctgcgt caatgggagc catgtgtaca
     1141 atgaagagcc tcagccccca ttacggcacc gcagctccat ctcaggcccc tttccctcaa
     1201 gctccttaca cagtgtccca cctcggtcct ctgaggaggg gtctcggtcc tcagatgact
     1261 cttgggtcag aggcagccat ggcaccagca gcttagaggc agtgcctgga caggaggagc
     1321 tgagcaagca aaccaaagtg ctggctccag gggccagttg ctctgcagag gaggagggga
     1381 cccgaccacc agagggaaag ccagtccagg ttgctacacc catggtggca tcctctgagg
     1441 ccatagcagc agaaaaggag cggaagcccc ggatggggct cttccaccac caccaccacc
     1501 aagggctgag tcggaatgag gtggggcgcc gcggctcagt cggggagaaa gggagtcctt
     1561 ccctaggagc ctccccgcac cattcatcca ccggggagga aaaggccaag agtagctggt
     1621 ttggcctgag agagtccaag gaaccaactc agaagcccag tccccatcct gtgaaacccc
     1681 tcactgctgc ccctgtggag gctagccccg acaggaaaca gtctcgtact agcctgagca
     1741 cagccctgag cagcggactg gagaggctca agaccgtcac atctggaggc atccagtctg
     1801 tgcttccagc atcccagctt ggctcaactg tggacaccaa gaggctgaag gattctgctg
     1861 tgctggacca gtcagccaag tactatcacc tgactcatga tgagctcatt ggcctgctcc
     1921 tgcagcgcga gcgtgagctg agccagcggg acgagcatgt gcaggaactg gagagctaca
     1981 ttgaccggct gctggtgcgg atcatggaga cctcacccac actgctgcag atctccccgg
     2041 gtccctccaa gtgacccttc actccatccc tggagggatg gtgaggacct gtgtaatgcc
     2101 ctccactgac tgctctcacc gagagtaggg cgagcctgct ctcatggtca ctctctgctc
     2161 ccctccctgt cctgcctctg ctctgctgct ggaagggggc ctttaaaccc cctcttacct
     2221 gcccattttc tcccccagag aattggaaca aggttgttag cggtcaagat ggagcaggag
     2281 ttccatgggt tctggggtga gcgctagtat ctggggcaac actgttgaca gcacagacag
     2341 tcaccccatg acgttagttg tttcttctct tggccggctc tgcatctcca tttccctcag
     2401 acacccggag ggcctcccag gatcaactgg gacacgggtg gggactaagc tgcttgctgg
     2461 tctgtgcatt gtagacagcc agggcaccta ctcctcagcc ttgtgtctgt acttgagagc
     2521 aaggagccta tgtgttttag ttttgcctct ctgtctagag ctgtgtgtgg aacatctaag
     2581 cagggtgatg gtggtggtga cggtgatggt ggtatttgcc tgtgtgttct tcagctgccc
     2641 tgcccctctt cagacccttc cactccatgt cccagtagcg gccggaggtg gggctaggca
     2701 cagggagaag gcctccttgc tcctgaggtc ctccctacct ccctaacatg agaccctccc
     2761 tctgggttgg ggtttcaggc tgctgctcat gttttgtgga ccaggcttct gtgcctgttg
     2821 ttaccacgtg tcatgccaaa actgtgctgc tgcagactca gaacgtgtgg aaccaatcaa
     2881 aatgtgcctt ttatgggtga ggacaagagc ccctggatgt acatgtctct ctggtcatgg
     2941 tgtctcctcc ctattgagca catggaaatg gctgttaggg tcctgaaagg gggatgtgga
     3001 ccaggctttt ttgctaccct gagaagtacc tcagctaagg ctctggccaa tctgctgcca
     3061 cctcctaagc ctccctccta ctttctgctc ctcccctgac ccttatttgg agcatcccag
     3121 gataaaatct aatgcacagt aggtccaggg ctatccagca ccttattgtg cctggcgttg
     3181 ggtcccagtt gtgctgggcc agtgggcttg tctgaaagta ggaggcttcc ctctgcctta
     3241 ggagacacct gtacttagga aaaggccttg tggctttcca gctgctctgt ccctgctgta
     3301 cagccctcct gctcaccaat cctgctcacc cctgccttgc ctggcttggc tgaagtgcat
     3361 tttaaagtca agtatctgcc ctgtggtcca gtttctagtt tgcttgtgaa tacaaccgtt
     3421 ttccccatga catctggggg tccttggtgg ctgtgcatgt ggtatgtggt atgagtgaag
     3481 caggtgaaat gctgacagaa gatgctcttg gcccagtgga gaggtagtaa cttctttcca
     3541 gtatctctta acccagaaca cctcagaata gtctctgtgg atgacgtcag tcttctgcca
     3601 gcatggagca gatgaactcc acaatggggt ccaccacagc acagttacca actataggtc
     3661 aactcagaga agaggaaagt catcaccagt tcccagaata ttggggtgga ggcagtcatg
     3721 ggtgttggag gtgtctcttg aggaattgag tccctctgct aggaattcct ctgggcttta
     3781 attggtccca gccctgtctt ttgtctttca tccattcctg ctgtttggct tccttacatg
     3841 gccagggtag gggtgtctcc cagaggagtc ctgaactgag gccagggttt tgctcatgtg
     3901 tctgctcctt accacacact gcagagtgca gccagacagg cagtgagcag gcacagctct
     3961 gccctgcctt ttgtcttcct agttgaaact gctgtctata aagagcttgt tcttcatgtt
     4021 ttgaggactt tatgaagaat aaaaggttcg tgtaccacag cca
//
