LOCUS       NM_001107023            3127 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RAB11 family interacting protein 4 (Rab11fip4),
            mRNA.
ACCESSION   NM_001107023 XM_001080932 XM_220737
VERSION     NM_001107023.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Bohm D, Keller K, Pieter J, Boehm N, Wolters D, Siggelkow W,
            Lebrecht A, Schmidt M, Kolbl H, Pfeiffer N and Grus FH.
  TITLE     Comparison of tear protein levels in breast cancer patients and
            healthy controls using a de novo proteomic approach
  JOURNAL   Oncol Rep 28 (2), 429-438 (2012)
   PUBMED   22664934
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Gorbea C, Pratt G, Ustrell V, Bell R, Sahasrabudhe S, Hughes RE and
            Rechsteiner M.
  TITLE     A protein interaction network for Ecm29 links the 26 S proteasome
            to molecular motors and endosomal components
  JOURNAL   J Biol Chem 285 (41), 31616-31633 (2010)
   PUBMED   20682791
REFERENCE   3  (bases 1 to 3127)
  AUTHORS   Muto A, Aoki Y and Watanabe S.
  TITLE     Mouse Rab11-FIP4 regulates proliferation and differentiation of
            retinal progenitors in a Rab11-independent manner
  JOURNAL   Dev Dyn 236 (1), 214-225 (2007)
   PUBMED   17089410
REFERENCE   4  (bases 1 to 3127)
  AUTHORS   Fielding AB, Schonteich E, Matheson J, Wilson G, Yu X, Hickson GR,
            Srivastava S, Baldwin SA, Prekeris R and Gould GW.
  TITLE     Rab11-FIP3 and FIP4 interact with Arf6 and the exocyst to control
            membrane traffic in cytokinesis
  JOURNAL   EMBO J 24 (19), 3389-3399 (2005)
   PUBMED   16148947
REFERENCE   5  (bases 1 to 3127)
  AUTHORS   Wilson GM, Fielding AB, Simon GC, Yu X, Andrews PD, Hames RS, Frey
            AM, Peden AA, Gould GW and Prekeris R.
  TITLE     The FIP3-Rab11 protein complex regulates recycling endosome
            targeting to the cleavage furrow during late cytokinesis
  JOURNAL   Mol Biol Cell 16 (2), 849-860 (2005)
   PUBMED   15601896
REFERENCE   6  (bases 1 to 3127)
  AUTHORS   Wallace DM, Lindsay AJ, Hendrick AG and McCaffrey MW.
  TITLE     Rab11-FIP4 interacts with Rab11 in a GTP-dependent manner and its
            overexpression condenses the Rab11 positive compartment in HeLa
            cells
  JOURNAL   Biochem Biophys Res Commun 299 (5), 770-779 (2002)
   PUBMED   12470645
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_220737.4, XM_001080932.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132267 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..3127
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /note="RAB11 family interacting protein 4"
                     /db_xref="GeneID:303337"
                     /db_xref="RGD:1305063"
     exon            1..204
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..1959
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /note="RAB11 family interacting protein 4 (class II)"
                     /codon_start=1
                     /product="rab11 family-interacting protein 4"
                     /protein_id="NP_001100493.1"
                     /db_xref="GeneID:303337"
                     /db_xref="RGD:1305063"
                     /translation="MAGGAGWAGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAAL
                     GLRFGQGEEVEKLVKCLDPNDLGRINFKDFCRGVFAMKGCEELLKDVLSVESAGTLPC
                     SPDIPDCVEQGSDFSGSTYADGELLPREPGFFQEDEEEAMTLTLPEGPQELDMDSPME
                     SSQGPEGSVRSPVEEKEPELGGLFLPEDKSLVLTPAMTTSDLSTHSTASLISNEEQFE
                     DYGEGDDVDCAPSSPCPDDETRTNVYSDLGSSVSSSAGQTPRKMRHAYNSDLLDVYCS
                     QCCKKINLLNDLEARLKNLKANSPNRKISSTAFGRQLMHSSNFSSSNGSTEDLFRDSI
                     DSCDNDITEKVSFLEKKVTELENDSLASGGLKSKLKLENVQLVHRVHELEEMVKDQET
                     TAEQALEEEARRHREVYCKLEREKSTELELLNTRVQQLEEENTDLRTTVTRLKSQTEK
                     LDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRREL
                     EHLQMYKLDCERPGRGRSSSGLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQ
                     ILSLSLYEAKNLFATQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILA
                     ILDHNPSILEIKH"
     exon            205..292
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            293..381
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            382..611
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            612..806
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            807..941
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            942..977
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1077
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1181
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1322
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1404
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1542
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1698
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1842
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..3127
                     /gene="Rab11fip4"
                     /gene_synonym="RGD1305063"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgatggcgg cggcgcgggt ctcgggctag ctgcgggcgg cgcggatggc gggcggcgcg
       61 ggctgggcgg gcgcccccgc ggctctgctg cgctccgtgc gccgcctgcg cgaagtgttc
      121 gaggtgtgcg gccgcgaccc cgacggcttt ctacgcgtgg agcgcgtcgc ggcgctcggc
      181 ctgcgcttcg ggcaaggcga ggaggtggaa aaacttgtga agtgtttgga tcccaatgac
      241 ctggggagaa tcaacttcaa ggatttttgc cgtggagtat tcgccatgaa agggtgcgag
      301 gagctgctga aggacgtgct gtcggtggag agtgcaggga ccctgccatg ttctccagac
      361 atcccagact gtgtggagca gggcagcgac ttctctggct ctacctatgc tgatggcgag
      421 ctcctcccca gggaacccgg cttcttccag gaagacgagg aggaagcgat gacattgacc
      481 ctacctgagg gaccccagga gctagacatg gacagcccca tggagagcag ccagggcccg
      541 gagggctctg tcaggagtcc tgtggaggag aaggagcctg agctgggggg cctgttcctg
      601 ccagaggaca agtccctcgt cctcactcca gccatgacca cttcagacct ttccactcac
      661 tccaccgcct ctctcatcag caacgaggaa caatttgaag actatggaga gggggacgac
      721 gtggactgtg ctcccagcag cccttgccct gacgacgaga ccagaaccaa tgtctactca
      781 gatctagggt catctgtgtc ttccagtgcg ggacagactc ccaggaagat gcgacatgcc
      841 tacaacagtg acctgctaga tgtgtactgc tctcagtgct gcaagaagat caacctgctg
      901 aatgacctgg aggccaggct gaaaaacctg aaggccaaca gtcccaacag gaagatctca
      961 agcacagctt ttggacggca gctcatgcac agcagtaact tcagcagcag caatggcagc
     1021 accgaggacc tgttccgaga cagcatcgac tcctgtgaca atgacatcac agagaaggtg
     1081 agcttcctgg aaaagaaggt aacggagctg gagaacgaca gcctggcgag cgggggcctg
     1141 aagagcaagc tgaagctgga gaacgtgcag ctggtgcaca gggtgcatga gctggaggag
     1201 atggtgaagg accaggagac cacagcggag caggcgctgg aggaggaggc ccggcgacac
     1261 cgcgaggtct actgcaagct ggagcgggag aagagcacag agctggagct gctcaacacc
     1321 agggtgcagc agttagaaga agaaaacaca gatctgagaa cgacagtgac acgactcaag
     1381 tcacagacgg agaaactgga cgaggagcgg cagcgcatgt ctgaccggct ggaggacacc
     1441 agcctgcggc tgaaggacga gatggacctt tacaagcgca tgatggacaa gctgcgacag
     1501 aaccgcctcg agttccagaa ggagcgggag gcgacgcagg agctcatcga agacttgcgg
     1561 agagagctgg agcacctgca gatgtacaag ctggattgcg agcggccagg ccggggccgc
     1621 agctcatccg gccttggcga gttcaatgcc agagcccgtg aggtggaact tgagcatgag
     1681 gtcaagcgtc taaagcagga gaatcacaaa ctgcgggatc agaatgatga cttgaacggg
     1741 cagatcctga gcctcagcct ctatgaggca aagaacctct ttgccaccca gaccaaagcc
     1801 cagtctctgg ctgcagaaat cgacacagca tctcgagatg agctaatgga ggccctaaag
     1861 gagcaggagg agatcaactt ccgactgaga cagtacatgg acaagattat cctggctata
     1921 ctggaccaca acccctccat cctggagatc aaacactgag tcagggctgg ctgcggagcg
     1981 gccgtcggac ctgggaccta ggggcaggcc tgcctgagga cggagacgca ggcaggaccc
     2041 cacactcact ctgtaaatgt acctctgacc accctgtgtg tgtgctgatg tgtgggtagg
     2101 aggctgtgag cacacaggca aggagtgagc ttggggccat ggctgtgggt gacaagccgt
     2161 ggtgagctgt gtgtgcactt tgaagcccct ttgtgagggg cagaggggac tggatgcggt
     2221 agggacactc tcaggagtta gcagcaagga ctggaagctt gcatttcaga tactgatgac
     2281 atgattctac ctctgtggct aagggttaga agatactctc aggagatggg ttctctcccc
     2341 tcccccactg gagtgaggac aaagctgtta cagtctccag aattcagtgt ccttttcagc
     2401 ctttcaggcc acctgtcatg ccgggttttt ttcttttttc ttttttttta agctcagagg
     2461 aggaaggggt atggagagaa ccctgtgggc tagccctctg gggtacaggt aaacaggtca
     2521 gtggactgct tacagagcag ctagcgtgta ctgtccatgc ctttgggctg agtccctcgt
     2581 agttttctgt gcccttccca gccagtcttg cttgcctacc tcctctttct gatttggctt
     2641 cattttgttt tggagatggg aaatataagc agcattcagc taggggtgga aggaaggcca
     2701 agaagaaggg tagggtgcca gggctggtat gtgttagcac tgggggccaa aaggagtgac
     2761 tgggagaaag gtgtgttttc atggctgcct cgtcacgtgt gacctgtctg ggttccatgc
     2821 tccttggtga aaggacaagt gtttccaaga caacaccctt tcctccagct ttctgatccg
     2881 cctgagcctg gtccccagtt agagagcaga cactgctgtt gggagattca gtgaaaagca
     2941 ttgggggacc ttagtcttcc gttctgtgga tacatgatgg gaattcaccc cggggtgtgg
     3001 tggtgggggt gttacaatgt gatctgggga gtaggtactg tacttggagt gttctgattt
     3061 atctgtttca tacggcttct gattggcttc cctaccccag ctataaacgt gtatggtctc
     3121 aagtctt
//
