LOCUS       NM_001191555            7848 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Rattus norvegicus RAB11 family interacting protein 1 (Rab11fip1),
            transcript variant 1, mRNA.
ACCESSION   NM_001191555 XM_002728427
VERSION     NM_001191555.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7848)
  AUTHORS   Carson,B.P., Del Bas,J.M., Moreno-Navarrete,J.M.,
            Fernandez-Real,J.M. and Mora,S.
  TITLE     The rab11 effector protein FIP1 regulates adiponectin trafficking
            and secretion
  JOURNAL   PLoS One 8 (9), e74687 (2013)
   PUBMED   24040321
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7848)
  AUTHORS   Eva,R., Dassie,E., Caswell,P.T., Dick,G., ffrench-Constant,C.,
            Norman,J.C. and Fawcett,J.W.
  TITLE     Rab11 and its effector Rab coupling protein contribute to the
            trafficking of beta 1 integrins during axon growth in adult dorsal
            root ganglion neurons and PC12 cells
  JOURNAL   J Neurosci 30 (35), 11654-11669 (2010)
   PUBMED   20810886
  REMARK    GeneRIF: An interaction with Rab11 is necessary for long-range
            targeting of beta1 integrins to the growth cone along axons and in
            neurons.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC107469.1 and JAXUCZ010000016.1.
            
            On Oct 14, 2010 this sequence version replaced XM_002728427.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2824724.1,
                                           SRR26643429.50853.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1666              BC107469.1         1-1666
            1667-3289           JAXUCZ010000016.1  71609379-71611001
            3290-3788           BC107469.1         1667-2165
            3789-7848           JAXUCZ010000016.1  71616282-71620341
FEATURES             Location/Qualifiers
     source          1..7848
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.3"
     gene            1..7848
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /note="RAB11 family interacting protein 1"
                     /db_xref="GeneID:498650"
                     /db_xref="RGD:1562965"
     exon            1..427
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..3617
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /note="isoform 1 is encoded by transcript variant 1; rab11
                     family-interacting protein 1; rab-coupling protein; RAB11
                     family interacting protein 1 (class I)"
                     /codon_start=1
                     /product="rab11 family-interacting protein 1 isoform 1"
                     /protein_id="NP_001178484.1"
                     /db_xref="GeneID:498650"
                     /db_xref="RGD:1562965"
                     /translation="MSLAASAGRGPGTMWSPTHVQVTVLQARGLRAKGPGGTSDAYAV
                     IQVGKEKYATSVSERSLGAPVWREEATFELPPLLSSGTAPAAAAATLQLTVLHRALLG
                     LDKFLGRAEVDLRELHRDQSRRKKQWYTLKSKPGKKDKERGEIEVDIQFMRNNMTASM
                     FDLSMKDKSRNPFGKLKDKIKGKNKDNTSDTASAIVPSTTPSVDSDDESFSKDKKKKS
                     KIKTLFSKPSLQKTPLSQSMSVLPTSKPDKVLLRPGDFQSRWGDEGDNEDESSSASEV
                     MSQKRTSSTDHTQPNQSNFSLPKKEGLSFLGGLRSKNDSLSRSNVCINGNHVYMEQPE
                     AKSEIRESSPSNSPSPQGFRKRHLFSSTENLAARSPKEPGEGGGMSSDRRLSDSSTKD
                     SMKSMSLPSYRPLTTADSREGLSPANMEVATKETKDSKKQESKKSSLLSLVTGKKDVA
                     KGSEGEPLPPVSEKEKGRKGVLVEAQLREEDLVRRPEKDAVPVASQWGSSQNPFEDAQ
                     ISDLEASVESKCEPKPPVPVPRTPQTRAVKPRLEVSPEAQPKARLPSSDSAPFAAFLS
                     SSAQAPVLSDLRCDSETQFSESPSASSFSSPLAAPISTSTPVEHWPTDKGEADAEEPS
                     LLLRAISSVTPAANAGSSASRSPCEQLPTPERKGPQESSGGKARESGTGKEVGSDESE
                     KSLIGQHEELLKIPFPERHWALGGMTTATSPVQEEEAASSFHSVRPKHQEMHQNASGG
                     QRKAKKRVSFSEQLFVEEETEGPTWLEEGDKGHPQQLSQEGPVASSMPSAGSPESPHT
                     EGTGQEPVTISSESESFLEGPQSEASPARGTQLLRDEKDDLMAPCQSKASDHEGLLSN
                     PLSDLPSASDLKSPIMADLSLSLPSIPEVASDDERFDETGDGGKGARLADLEAGVSPL
                     NVSPSILETAGQTGGRAHESVPVENQCDLRPQTPKAAPSEQTAALGSPKPHLGKSSSV
                     NEEYPGPDTVDEEKLKGSGRPGSPLDSPVRSPSLAETFPATHSFPGSPPSDTHHTTVA
                     ESQKQATADVSSNRVENFGKKKPLLQAWVTPSEIHPVPAQPSAGAGAAKHRPHPVKPM
                     NTTAPKITNSSLGTATIISENLINEALMKKYQPSDPAFAYAQLTHDELIQLVLKQKET
                     ISKKEFQVRELEDYIDNLLVRVMEETPNILRVPAQTGKKAGKM"
     exon            428..873
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1666
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..3289
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
     exon            3290..3398
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
     exon            3399..7848
                     /gene="Rab11fip1"
                     /gene_synonym="Rab11-FIP1; RGD1562965"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagcggcta cctactggcc tcctagccgg ctgcggcgtc cgccaccatg tccctggcgg
       61 cctcagcggg ccggggcccg gggactatgt ggtcccctac gcacgtacag gtgacggtgc
      121 tacaggcacg aggcctgcgg gccaagggtc ccgggggcac gagcgacgcg tacgcggtga
      181 tccaggtggg caaggagaag tacgccacgt cggtgtccga gcgcagcctg ggcgcgcccg
      241 tgtggcgcga ggaagccacc ttcgagctgc cgccgctcct gtcctccggg accgcgcccg
      301 ccgccgccgc cgccaccctg caactcaccg tcctgcaccg cgcgctgctc ggtctcgata
      361 agttcctggg tcgcgccgaa gtggacctgc gggagctgca ccgggaccag agccgcagga
      421 agaagcaatg gtacaccttg aagtccaaac ccggaaagaa ggataaagag cgaggagaaa
      481 tcgaggtgga catccagttt atgagaaaca acatgacggc cagcatgttt gacctctcca
      541 tgaaggataa gtctcgcaat ccgtttggga aactgaagga caagatcaaa gggaagaata
      601 aggacaacac ctcggacacc gcctcggcca tcgtccccag cacgacaccc tcggtcgaca
      661 gcgatgacga gtccttctca aaagacaaga agaagaagtc aaagatcaag actttgtttt
      721 ccaagccgag tttgcagaag accccgctct cccagtccat gtctgtcctg cccacttcca
      781 agccagacaa agtcctgctg cggccaggag acttccagtc ccggtggggt gacgagggcg
      841 acaatgagga cgagtcctcc tctgcctcgg aggtcatgtc ccaaaagcga acatccagta
      901 cagaccatac acaaccgaac cagtccaact tcagccttcc caagaaagaa gggctctctt
      961 tcctcggtgg cctccggtcc aagaatgact ccctttcccg gtctaacgtc tgtatcaacg
     1021 ggaaccacgt ttacatggag cagccagagg ccaagagtga gatcagggag agcagccctt
     1081 ctaactcccc ctccccgcag ggcttcagga aaaggcattt gttctcgtcc actgaaaacc
     1141 tggctgcccg gtctcctaag gagccagggg aaggaggtgg catgtcctct gacaggcgac
     1201 tgtccgactc ctccaccaag gactccatga aatccatgtc tttgccatcc taccgacccc
     1261 tgaccactgc ggacagtaga gagggcttat ctccagcaaa catggaggtg gctaccaaag
     1321 agacaaaaga cagcaagaag caggagagca agaagtcctc tttgctttct ctggtaacag
     1381 gaaagaaaga tgtggctaaa ggcagtgaag gcgaacctct tccccctgtc tcagagaaag
     1441 agaagggaag gaagggtgtg ctcgtggaag cccagcttcg ggaggaagat ctggtgagaa
     1501 gacctgagaa agatgctgta cctgttgcct cccaatgggg cagctcccag aacccctttg
     1561 aggacgcaca gatctcagac ctggaagcca gtgtggagtc taagtgtgaa ccgaaaccac
     1621 cagttcctgt tccaaggact ccccagacca gagctgtgaa gcctagactg gaagtttctc
     1681 cagaggctca gcccaaagct aggcttcctt cctctgactc tgctcccttt gccgcttttc
     1741 tctctagctc tgctcaggct cctgtccttt ctgacttgag atgtgactca gagacacagt
     1801 tctctgaaag tccttctgcc tcctctttct cgtctcccct agcagctcct atctctacat
     1861 ctactccagt cgaacactgg cccacagaca agggtgaggc cgatgctgaa gaaccttctt
     1921 tgctcctcag agcaatctct agtgtaacac cagcggcaaa cgctggttct tctgcctcga
     1981 gatcaccttg tgaacagctt cccacacctg agcggaaggg gccgcaagag tcttcagggg
     2041 gcaaggccag agagtcaggc acagggaagg aagtcggcag tgatgaatca gaaaagagcc
     2101 tcattgggca gcatgaagaa ctcttgaaga ttcctttccc agagcggcat tgggctctgg
     2161 gtggaatgac tactgcaacg tcccctgttc aagaggaaga ggcggcctcc tcatttcaca
     2221 gtgtaaggcc gaagcatcag gagatgcatc agaatgccag cggagggcaa aggaaggcca
     2281 agaagcgcgt gtctttttct gaacagctct ttgtggaaga agaaacagaa ggacccactt
     2341 ggcttgagga aggggacaaa ggtcatcccc agcagctatc acaggaaggg cctgttgctt
     2401 cgagcatgcc cagtgcaggt tctccagagt ctccccacac agaaggcaca ggacaggaac
     2461 ctgtgaccat ctcttctgaa agtgagagtt tcttggaagg cccccaaagt gaagccagcc
     2521 cagcaagagg tacccagctt ttgagggatg agaaggatga cctcatggct ccctgtcaga
     2581 gcaaagccag cgatcatgag ggtttgctct ctaacccctt gagtgacctc ccgtctgcct
     2641 cagatttgaa atctcctatc atggccgatc tgagcttgtc tcttccatcc attcccgaag
     2701 tggcctcgga tgatgaaaga ttcgatgaga ctggagatgg aggaaaggga gcaaggctgg
     2761 ctgatctaga agcgggagtt tcacccttga atgtgtcacc ttccattctg gagacggcag
     2821 ggcagactgg tggcagggca catgagtcag tgcccgtgga gaatcagtgt gacctcaggc
     2881 cccaaactcc caaagcggct ccttctgagc agacagcagc attgggaagt cccaagccac
     2941 atcttggcaa gagctcaagt gtgaatgaag agtacccagg ccctgatact gtggacgaag
     3001 agaagctgaa gggaagtggg aggccaggtt cgcctctgga ctctcccgtg cgcagcccct
     3061 cactcgctga gacctttccc gccacacact ctttccccgg ctctccacct tccgatactc
     3121 accacaccac tgtagcagaa tctcaaaagc aagcgacagc agatgtctcc tctaatagag
     3181 ttgagaactt tggcaagaag aagccacttc tacaagcctg ggtcacaccc tcagagatcc
     3241 atccagtccc cgctcagcca agtgcgggag ctggggcagc caagcacagg cctcaccccg
     3301 tgaagccgat gaacacaaca gcccccaaga taacaaactc tagcttggga accgccacca
     3361 tcatcagtga gaacctgatc aatgaggccc tcatgaagaa ataccagccc tcggatccag
     3421 cctttgccta tgcccagctg acccacgatg agctgatcca gttggtcctc aaacagaagg
     3481 aaaccatcag caagaaggag ttccaggtgc gggagctgga agattacatc gacaacctgc
     3541 tggtcagagt catggaggag acccccaaca tcctccgagt gccagcgcag acaggcaaaa
     3601 aggctggaaa gatgtgaact gcggaaggaa acacgtcctg tgagcttgtt tctactgcct
     3661 ctgagctcaa gggtgtggtc tgcctagtga ccggccacag gctccgattg cctgtcccgt
     3721 acctcctctg tcaagagtta attctagttg agaccaggtt aatcattata atgaatcttt
     3781 actatacatt tccagcattt tatttttaaa tgccactgtg cctttgacta aattgtaaat
     3841 ataatatttg atccgatgta ttttaacccc agggttgttg ccctctgata ctgagatctt
     3901 taggcatggt tcttccatga aggtaggctt agggtgaggc aagaaagaga ctgctttggg
     3961 cgctgttccc gatttcttgg cctttgagca gccccgggga ggcagatgcc cagtttttaa
     4021 ttcaggtcaa cgcctaggcc tcaagggttg tttggtgagg gtcggtttga gagacggtgt
     4081 tctgttctca agggggggat gccgtgtagc ctgggctgct ctagaattca ctgtgtacgg
     4141 agactagcct cagatgtctg atcttccggc ccccacctcc caagtgctgg gctttcatct
     4201 gtgtttgatg ccttctggct gaagcacagt tgtttacaga aagcctctga gcgttgctcc
     4261 ttaagattta acatgccttt tacaatttcc actcccctct agccttaaaa atatgatctt
     4321 tgtgggtggg gagatatagc tcagtggggt cacgtgagga tctgcatttg gattcttagc
     4381 acccatgctg aagcctgcag tagtggcaat gtgtctgggt agggggtcgg ctgggggagg
     4441 gcagagccag gcagatctca agggctcact ggaaactcca ggttcagtga gggactgtct
     4501 taataaaatg aaaagctacc atagattctg cccttcatgt ggttccaaag atgtgagcac
     4561 accccacaca catgtgtgta tacacacaca cacacacaca cacacacaca cacacacaca
     4621 cacacacact gctctttagg gccatttcct ggagacatga aataaagagt cacttttcag
     4681 cctggagaga tggtccagtg gttaagagca ctcactggct gttcttccag agaacctgca
     4741 ttcaattccc agcacacaca tggtggctca ccactgtctg tacctcccgt tcaagggaat
     4801 ctgactgtca cacagacata cacccagaca aagtatcaat acacattaag ttaaattaaa
     4861 tacattttaa aaagtcagtg tcggttgggg atttggctca gtggtagagc acttgcctag
     4921 gaagcaaggc cctgggttcg gtccccagct ccgaaaaaaa gaaagaaaaa aaaaagtcag
     4981 tgtctacttc agtagggaaa atttgtcagc ctcccctctc aggctaccag gcttcctgtc
     5041 ggcctctctc cagactctcg ctacagcagc tctgtgaggt agcgaatgat tttaggaggg
     5101 tcctttggtt tccttccatt tgcttgttca ctgatgttcc tggaagggag tagacagagt
     5161 ccagcgactc ctcaggatga gggagtcttg ggcgggggct gggcaagtgc tcagtgggta
     5221 gggcaccccc aacccacact tcagcaatga gtaaaaattg tggcgagcta caagatgaca
     5281 tttgcttttt actgctactt cctgatttgg gggagctttg ttgctgctct ttggagacag
     5341 gatctcactg cttcagactt ttcatctccc tgcctcggct tttcaaattt ccaaatactg
     5401 gaattagagg tatgcctggt agatcgatcg atcggtctgt ctgtctgtca gtctgtctgc
     5461 ctgcctgtct gtctatctat ctacacaaac acacacacag agcccctttt tcactaatag
     5521 agggaattcc attgctggtc acctcattct agagttaaca tgttgttcat gtttcttctt
     5581 cctggttggt cctaataaaa tctcatcaaa tcttaacgtc tctgctaggc aaaccgtaga
     5641 ccagtgaagt ggatagggtg gggatagtgg tggttaccaa tgaagaatcc gtgtatgttc
     5701 ttatcaccct gaaggtgtgg gacatcggtt atactggagc actttaatct gaagggcaag
     5761 actgtaactt gatttatcta actagctgtt aacgatccac acgtattctt atctaatctc
     5821 ttcaaccgta ctagggacca ctgcagattt ctgagatgat ttgtattttt tttcctagtg
     5881 ttgtgaaatt cattaatatg cctataaaga aaaccatgtc cacttgacct cgagaataat
     5941 gcacatgtac atttctgttc tgcatctttt ttttttttac ttgatataaa tgcattttta
     6001 ctgtgataac ccaagtgcac tgggggaggt ctctgctgct actaggacct ttggtatgta
     6061 accaggtcag ctctagagag gacatctagg tgaagtgaat tcccatgctc caaaatgcca
     6121 cttgggaact ctggagagtg aaggacagtc tacttcaggg gctttgctgg tttctgccag
     6181 cgctgggaaa caccgcattt ctaactttgt tgtgcctcag agagtacata gaggccacgc
     6241 ctacttaata actgttctcg acgattcgct ggggactgag gaaggatacc aaggaaagct
     6301 gagcctgcat tgagccactg gcagaggttg gtgacaggga gaggcctgga gctacagaga
     6361 cttgactttg gcttgtgctc gtagcttcca ttcatgccaa catgaggtgc cctggagggg
     6421 cccgcgctct ggagaaagaa gagaaggatc ccttgcctgg ctgcctccaa gaaagcccag
     6481 ccagggattt tggtggagta gaagggcatt ggactaaatg ccagcaagct ccatctggag
     6541 gacggcttcc taaaacgcag ccagcctctg gcctaatggt ttcctatcat cttattcctg
     6601 gctttggcac ccggcctggc ccccctgttg cattccagta tattaccttt accgtggcca
     6661 cagaaggaag gagcaatccc tgccccgtgc cgtgctccgc tgctgcccgg gtgcatgata
     6721 gatgagctgt gtccttccgg cttctcagtt cccagggcag caagggagag gctgctccat
     6781 gaggcttcct ggctactgtg ttgaggttag agttttcggt ccctgggttc ttctccggga
     6841 cagccgcatc cctgccttta gaattgggga ttaaatgcag tgtcttgtgc gagctaatcc
     6901 catgctacac tcttagctgg atccccgccg gcccccatgt tgtggttttg tctttgtttt
     6961 tctcagacat gttctcttgt gtggcccagg ttaatcttga gctgatttaa tggctactaa
     7021 tgaccttgaa ctcctgatcc tcctgtctcc accttgcaag tgctgggaat agcagagttt
     7081 gctaccgttc acagctttta gtttttttga gggtgggggt gggtactaat ccaggatcct
     7141 tcaagactga atataaagca gtggccttag gtaaggaaca tgaacccaca ccaaccccac
     7201 ccctgggttc ttctacctac tttggtggct gctaaattga cttttacctt cctccaaagg
     7261 aaggctcacc tagtggaggc tttttttgtt ttgttttgtt tggtgacatt tggttggttg
     7321 aggtttgggg gttttttgag gggttttgtt ggtgatggtt tggttttttg agacagagtt
     7381 tctgtgtatc acagccctga ctgttctgga actcactctg taccaggctg gcctcaatct
     7441 cagaggtcca cctgcctctg cctcccagat taaaggtgtg tgcggccact gcctggcttc
     7501 agctggtgat ttttaattac agaattacta ttctctgctg tgtttccttt aggaattttg
     7561 aatttgggat taggtgtata gttaatactg tgtttgcctt ctatgtgtaa ggcactaggt
     7621 ttgatcacac agccccagga ctgtaaactg agcagtgtga tgatcccacc tggaatccca
     7681 gccagcattt aggaggtgga atcaagtgac cactgcatct tcagcaacat agggaggttt
     7741 aagtcagact gggatccaca agaccttatc acaaaacaaa acaaaaacca acaacaataa
     7801 caaaacccta agattcctaa caataaataa aattatacca cctttcaa
//
