LOCUS       NM_001166403            1458 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus RT1 class I, locus T24, gene 3 (RT1-T24-3), mRNA.
ACCESSION   NM_001166403
VERSION     NM_001166403.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1458)
  AUTHORS   Hurt P, Walter L, Sudbrak R, Klages S, Muller I, Shiina T, Inoko H,
            Lehrach H, Gunther E, Reinhardt R and Himmelbauer H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883048.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760384,
                              SAMEA5760393 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                BX883048.1         256055-256106       c
            53-349              BX883048.1         252151-252447       c
            350-622             BX883048.1         250497-250769       c
            623-898             BX883048.1         249916-250191       c
            899-1037            BX883048.1         249672-249810       c
            1038-1458           BX883048.1         248803-249223       c
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1458
                     /gene="RT1-T24-3"
                     /note="RT1 class I, locus T24, gene 3"
                     /db_xref="GeneID:414788"
                     /db_xref="RGD:1624211"
     CDS             1..1005
                     /gene="RT1-T24-3"
                     /codon_start=1
                     /product="RT1 class I, locus T24, gene 3"
                     /protein_id="NP_001159875.1"
                     /db_xref="GeneID:414788"
                     /db_xref="RGD:1624211"
                     /translation="MWALIFWFLTHPQETGARSHSLHYSYSAVTEPGPGVPAFFASGF
                     VDNQPFIHYDSRKMEAEPCADWLRENPYYFDEETQVFTNRMKIFQLSLRNIQQYYNSS
                     GDRSQRADGFHQQAGPHTLQFTYGCEMQDNRTTGHWQYGYDGRDYLTLDLDSMQYTAA
                     TFIAGYTKHKWQNNEYWLEREKTYLEKECVLWLKRYLTMGGENFTRTDPPQTTVTCHP
                     RPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPL
                     GKEQKYTCRVEHEGLPEPVSLTWEPLQLTTSKTEVCARGRWGLQATTLCVLMVFWAWC
                     "
     exon            1..52
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
     exon            53..349
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
     exon            350..622
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
     exon            623..898
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1037
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1458
                     /gene="RT1-T24-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtgggctc tgatcttctg gttcctgacc cacccccaag aaactggagc ccgatcacac
       61 tctctgcact attcttactc agccgtgaca gagccgggcc caggagttcc tgcatttttt
      121 gccagtggtt ttgtagataa ccagcccttc atccactatg acagtaggaa gatggaggca
      181 gaaccttgtg ctgactggct gagggaaaat ccatattact ttgatgagga gacccaggtt
      241 ttcaccaatc ggatgaagat cttccagttg agcctgagaa acattcagca atactacaac
      301 agctctggtg accggagtca gagagcagac ggcttccacc agcaagcagg ccctcacacc
      361 ctccagttca cgtacggctg tgagatgcag gacaacagga ccacagggca ctggcagtat
      421 ggctacgatg gcagggatta cctgaccttg gacttggact ctatgcaata tacagcagcc
      481 accttcattg ctggctacac caagcacaag tggcaaaaca atgagtactg gctggagaga
      541 gagaagacct acttggagaa ggagtgtgtc ctgtggctaa agagatactt aactatggga
      601 ggagagaact ttacccgaac tgaccctcca cagacaaccg tgacatgcca ccccagacct
      661 gaaggtgatg tgaccctgag gtgctgggcc ctgggcttct accctgctga catcaccctg
      721 acctggcagt tgaatgggga ggacctgacc caggacatgg agcttgtgga gaccaggcct
      781 gcaggggatg gaaccttcca gaagtgggca tctgtggtgg tacctcttgg gaaggagcag
      841 aagtacacat gccgtgtaga gcatgaggga ctgcctgagc ccgtcagcct gacatgggag
      901 cctcttcagc tcaccacgtc caagacagaa gtatgtgcta ggggcagatg gggacttcaa
      961 gcaaccaccc tgtgtgtcct catggttttc tgggcctggt gctagtgttt cttggactta
     1021 cctgctacag aatccaggcc agaagaaagg actggctccg tcagttcctg aagaggagag
     1081 gctctcagga tgaggaccca gggacagggg gctctgtggg accgggaaag gtagcctagt
     1141 ccccgggtga gctaaggcaa gaagcccaga gactctgaag ggatggtagg agctttgcct
     1201 gtgcctgggc actaggccca tcagtagccg taccctcata gatttgtggc catcagttat
     1261 gtaatggcaa aaggcccaag ccccccacat tagatgaaga aaagagctgt gactccaagt
     1321 cacagaggct cttaggcttg tggacagctt ttgggagtca gttctcacct ttgatctctg
     1381 gggatcaaag agtttggaaa gacgccattt acccactgag ccttctctca agcctcaata
     1441 aacatcttta aattctta
//
